Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.5e-117 423.7 216 100.0
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 3.0e-98 362.1 189 97.4
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.0e-98 362.1 189 97.4
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.7e-94 349.0 182 96.7
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.5e-92 342.4 182 95.1
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.5e-68 263.5 182 74.7
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 4.1e-63 245.4 182 68.1
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 3.4e-57 225.7 183 64.5
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 3.4e-57 225.7 182 65.4
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 7.5e-57 224.6 180 65.6
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 3.7e-56 222.2 183 62.3
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 7.1e-55 218.0 175 64.6
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 9.2e-55 217.6 179 63.1
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.6e-54 216.9 181 62.4
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.7e-54 216.1 173 65.9
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 2.3e-53 213.0 185 61.1
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 2.3e-53 213.0 183 61.2
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 6.6e-53 211.5 192 57.8
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.9e-52 209.9 176 63.1
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 1.2e-51 207.2 183 57.9
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 2.1e-51 206.5 180 60.0
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 4.7e-51 205.3 185 58.9
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.7e-51 205.3 183 58.5
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.1e-50 204.1 181 54.7
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 1.4e-50 203.8 183 57.4
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 3.1e-50 202.6 182 57.1
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 5.2e-50 201.8 183 56.8
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 8.9e-50 201.1 179 59.8
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 1.5e-49 200.3 187 58.3
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 2.0e-49 199.9 179 56.4
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 1.7e-48 196.8 182 53.8
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.7e-48 196.8 183 56.3
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 1.7e-48 196.8 179 60.3
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 1.7e-48 196.8 178 58.4
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 4.9e-48 195.3 183 56.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 4.9e-48 195.3 183 56.3
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 8.4e-48 194.5 196 57.7
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.4e-47 193.7 177 57.1
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.4e-47 193.7 178 57.3
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 1.9e-47 193.4 171 59.1
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 2.4e-47 193.0 183 56.3
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 5.4e-47 191.8 179 58.1
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 7.1e-47 191.4 193 57.5
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 9.2e-47 191.0 177 57.1
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 9.2e-47 191.0 179 58.1
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 1.6e-46 190.3 183 55.2
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 2.7e-46 189.5 182 56.0
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 3.5e-46 189.1 182 54.4
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 4.6e-46 188.7 175 55.4
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 1.3e-45 187.2 182 52.7
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.7e-45 186.8 176 58.5
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.7e-45 186.8 192 49.5
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 2.3e-45 186.4 182 54.9
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 1.1e-44 184.1 183 56.3
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.2e-43 180.6 180 55.0
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.2e-43 180.6 182 51.6
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 3.1e-42 176.0 177 53.7
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 6.9e-42 174.9 182 50.5
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 8.9e-42 174.5 182 52.2
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 1.2e-41 174.1 182 52.2
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 1.5e-41 173.7 182 53.3
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 1.5e-41 173.7 182 51.6
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 3.4e-41 172.6 177 55.4
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 5.8e-41 171.8 171 53.8
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.3e-40 170.6 175 49.7
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 1.7e-40 170.2 171 53.8
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.7e-40 170.2 171 53.8
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 3.8e-40 169.1 174 51.7
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.8e-40 169.1 176 51.7
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.9e-40 168.7 182 49.5
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 8.4e-40 167.9 196 49.0
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.4e-39 167.2 173 52.6
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 1.4e-39 167.2 180 51.1
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.9e-39 166.8 182 48.9
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.9e-39 166.8 209 45.9
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.4e-39 166.4 183 50.3
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.4e-39 166.4 183 50.3
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 4.2e-39 165.6 182 51.1
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 2.1e-38 163.3 169 52.7
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 2.1e-38 163.3 182 48.9
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.7e-38 162.9 166 53.0
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 3.5e-38 162.5 193 51.8
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 6.0e-38 161.8 183 49.2
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.3e-37 160.6 172 51.2
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 2.3e-37 159.8 173 49.7
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 3.0e-37 159.5 172 51.7
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 3.0e-37 159.5 189 51.9
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 5.1e-37 158.7 180 50.6
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 1.1e-36 157.5 172 51.2
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 4.3e-36 155.6 171 49.1
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 4.3e-36 155.6 177 51.4
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 7.3e-36 154.8 172 51.2
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 4.8e-35 152.1 190 50.5
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 6.2e-35 151.8 182 47.8
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 4.0e-34 149.1 171 49.1
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 5.3e-34 148.7 200 45.0
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.2e-33 147.5 175 48.6
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 2.6e-33 146.4 188 42.0
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 4.5e-33 145.6 118 58.5
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 1.7e-32 143.7 182 44.5
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 2.2e-32 143.3 178 45.5
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 3.8e-32 142.5 181 47.5
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 3.8e-32 142.5 182 46.2
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 6.4e-32 141.7 180 45.0
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 2.4e-31 139.8 180 45.6
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 3.2e-31 139.4 154 50.0
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 2.7e-30 136.3 180 46.1
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 3.5e-30 136.0 177 43.5
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 6.0e-30 135.2 178 46.6
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.8e-29 133.7 172 47.7
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.8e-29 133.7 177 46.3
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 3.9e-29 132.5 193 39.9
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 5.1e-29 132.1 193 39.9
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 8.7e-29 131.3 178 41.0
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 7.4e-28 128.3 184 39.1
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 2.1e-27 126.7 184 38.6
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 2.8e-27 126.3 177 40.7
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 3.6e-27 125.9 178 40.4
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 4.8e-27 125.6 183 42.1
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 4.8e-27 125.6 183 42.1
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.1e-26 124.4 178 40.4
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 1.2e-25 120.9 176 41.5
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.2e-25 120.9 174 43.1
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 3.4e-25 119.4 182 38.5
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 3.4e-25 119.4 182 38.5
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 4.9e-24 115.5 114 55.3
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.8e-21 107.1 211 37.9
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 3.0e-21 106.3 114 50.0
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 7.4e-20 101.7 183 41.5
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 2.8e-11 73.2 186 27.4
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 5.3e-10 68.9 174 32.8
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 6.1e-06 55.5 115 30.4


User provided reference genes

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