Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.8e-194 681.8 353 100.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 9.5e-166 587.0 353 89.2
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 2.9e-159 565.5 353 85.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 5.6e-158 561.2 351 85.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.9e-151 538.5 340 84.7
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.6e-151 537.7 374 79.7
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 8.6e-143 510.8 353 76.5
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-140 503.8 353 75.4
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.9e-137 493.0 353 72.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-134 483.0 353 77.3
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.8e-132 476.5 352 70.2
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 1.5e-126 456.8 352 68.5
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 7.3e-126 454.5 346 69.9
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.4e-124 450.3 280 84.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.0e-124 448.7 290 81.4
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.2e-123 447.2 348 66.7
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.2e-123 447.2 352 67.3
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.2e-123 447.2 347 67.1
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.2e-123 447.2 351 66.7
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.8e-122 442.2 347 66.6
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.2e-121 439.1 351 64.7
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 9.3e-121 437.6 351 66.4
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.3e-121 437.6 353 70.0
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.2e-120 437.2 377 63.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.1e-120 436.4 350 64.6
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 6.0e-120 434.9 347 66.6
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.3e-119 433.7 351 65.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.3e-119 433.7 337 67.4
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.7e-119 433.3 345 66.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 8.7e-119 431.0 337 67.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.9e-118 429.9 351 65.8
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 3.3e-118 429.1 356 65.4
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.6e-117 426.8 341 65.7
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.8e-117 425.2 337 65.9
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.1e-116 424.1 353 65.4
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.4e-116 422.9 336 67.3
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 9.0e-116 421.0 347 64.6
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 9.0e-116 421.0 332 66.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 9.0e-116 421.0 335 66.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 4.5e-115 418.7 338 66.0
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 4.5e-115 418.7 351 63.5
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.8e-115 418.3 295 74.2
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.6e-115 417.9 350 64.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 7.6e-115 417.9 340 65.9
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.3e-114 417.2 332 66.3
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 6.4e-114 414.8 353 63.5
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.9e-113 413.3 347 65.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.4e-113 412.9 340 64.4
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 2.4e-113 412.9 348 62.4
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.4e-113 412.9 345 62.6
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 4.2e-113 412.1 348 64.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.1e-113 411.4 389 57.3
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.3e-113 411.0 338 63.6
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.2e-112 410.6 350 62.9
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.2e-112 410.6 348 62.4
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.1e-112 409.8 347 62.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.7e-112 409.5 340 64.1
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.7e-112 409.5 350 64.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 4.6e-112 408.7 351 62.4
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 7.9e-112 407.9 333 64.0
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.0e-111 407.5 363 60.3
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-111 407.1 379 57.8
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.3e-111 407.1 356 61.8
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.3e-111 407.1 354 61.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.0e-111 406.0 340 62.6
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 3.9e-111 405.6 331 64.7
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 8.7e-111 404.4 355 62.3
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.1e-110 404.1 347 62.2
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 4.3e-110 402.1 346 60.4
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 4.3e-110 402.1 346 62.1
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 4.3e-110 402.1 291 72.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 2.1e-109 399.8 370 60.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 2.1e-109 399.8 339 61.9
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.6e-109 399.1 337 61.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.1e-108 397.5 350 60.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.4e-108 397.1 336 61.9
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 3.1e-108 396.0 338 60.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.0e-108 395.6 345 63.2
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 5.3e-108 395.2 334 62.6
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 6.9e-108 394.8 339 62.2
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.5e-107 392.1 350 60.0
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 5.8e-107 391.7 351 60.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 7.6e-107 391.3 341 62.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 9.9e-107 391.0 338 60.1
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.2e-106 389.8 344 61.9
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 2.9e-106 389.4 344 58.4
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.4e-105 387.1 336 59.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.4e-105 387.1 355 62.0
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.4e-105 387.1 350 59.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 2.4e-105 386.3 334 60.5
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 9.3e-105 384.4 334 59.9
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.1e-104 383.3 344 57.8
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.5e-104 382.5 338 59.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 4.6e-104 382.1 344 60.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-103 380.9 335 60.3
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 3.0e-103 379.4 319 62.7
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 5.1e-103 378.6 334 59.3
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-102 377.5 300 66.7
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.9e-102 376.7 339 59.3
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 3.3e-102 375.9 332 59.9
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 4.3e-102 375.6 362 55.8
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.3e-102 375.6 366 54.4
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 9.6e-102 374.4 293 66.6
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.8e-101 372.1 338 58.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-100 369.4 290 67.2
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 5.3e-100 368.6 332 59.6
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.0e-98 364.4 291 65.3
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.0e-98 364.4 319 62.1
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-98 364.0 309 64.1
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.4e-98 361.3 337 57.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 9.3e-97 357.8 232 78.0
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.6e-96 355.5 351 56.4
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 2.5e-94 349.7 352 55.4
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.3e-94 349.4 334 58.4
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.6e-93 347.1 330 57.6
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.8e-93 345.5 341 54.0
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.0e-90 335.5 351 53.8
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.5e-89 333.2 211 86.7
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.5e-89 333.2 270 62.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 5.5e-89 332.0 330 56.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 9.3e-89 331.3 466 45.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.3e-87 327.4 338 52.1
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.8e-87 327.0 330 54.8
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.7e-86 322.0 339 53.1
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.3e-82 310.8 332 50.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 6.5e-82 308.5 338 53.6
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 4.8e-77 292.4 231 65.4
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.9e-74 283.1 341 48.1
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.8e-69 266.5 197 67.5
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.4e-68 263.5 198 75.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.6e-64 250.8 172 75.6
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.0e-64 248.4 190 65.8
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.8e-63 247.3 335 46.3
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.0e-59 233.8 186 65.1
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.0e-58 231.5 214 61.2
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 8.5e-58 228.4 222 52.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.9e-57 227.3 184 65.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.7e-54 215.7 172 64.5
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 7.5e-54 215.3 171 67.8
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 8.3e-53 211.8 148 72.3
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.0e-52 208.8 273 46.2
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.2e-51 208.0 324 40.7
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.2e-51 208.0 165 66.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.7e-51 206.8 207 58.9
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.5e-51 206.5 284 46.5
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.0e-50 204.9 374 38.2
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 3.2e-49 199.9 144 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.8e-47 194.1 218 49.1
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.0e-47 193.0 234 47.9
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.3e-45 188.0 300 41.3
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.8e-45 186.8 134 70.9
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 8.6e-42 175.3 166 54.8
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 9.8e-38 161.8 148 56.8
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 8.3e-37 158.7 149 57.0
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 3.2e-36 156.8 144 56.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.4e-36 156.0 333 36.9
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-35 154.8 178 51.1
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.5e-33 147.9 106 71.7
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 7.3e-33 145.6 191 41.4
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-27 126.7 165 47.3
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 3.6e-24 116.7 113 55.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.6e-22 110.5 84 71.4
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.4e-20 104.0 148 43.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-19 101.3 84 65.5
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 6.6e-18 95.9 132 47.0
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-15 88.2 66 72.7
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 3.1e-15 87.0 66 71.2
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 5.2e-15 86.3 87 50.6
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-14 84.0 78 57.7
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 9.9e-14 82.0 85 54.1
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.9e-14 82.0 92 50.0
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.6e-11 74.7 44 81.8
FAN06G2515 Fragaria x ananassa HOM05D057127 ORTHO05D208480 1.0e-10 72.0 42 92.9
FAN01G0553 Fragaria x ananassa HOM05D057127 ORTHO05D004642 1.3e-10 71.6 43 93.0
FAN03G2149 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.3e-09 66.6 38 84.2
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 8.1e-08 62.4 67 47.8
Lj4A710G53 Lonicera japonica HOM05D003898 ORTHO05D004642 4.4e-06 56.6 29 75.9


User provided reference genes

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