Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.6e-165 584.7 347 100.0
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-123 447.2 343 78.7
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.3e-86 322.8 386 60.4
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 4.3e-86 322.4 386 60.9
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 9.5e-86 321.2 386 60.4
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 6.2e-85 318.5 385 59.0
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 9.8e-83 311.2 412 54.1
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.6e-79 298.5 399 52.9
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 2.9e-58 229.9 399 46.9
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 3.8e-58 229.6 395 46.3
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.8e-47 194.1 387 42.1
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.5e-46 190.3 395 42.3
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 3.3e-46 189.9 389 42.4
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 2.1e-45 187.2 394 44.2
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 8.1e-45 185.3 391 44.5
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.8e-44 184.1 403 42.9
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.8e-44 184.1 399 42.4
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 3.1e-44 183.3 392 39.5
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 5.3e-44 182.6 387 41.3
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.0e-43 180.6 399 41.9
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.4e-43 179.9 388 41.0
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 3.4e-43 179.9 396 43.7
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 4.5e-43 179.5 396 43.7
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 2.9e-42 176.8 382 41.9
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.9e-42 176.8 404 37.6
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.4e-41 174.5 404 39.6
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.4e-41 174.5 395 41.5
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.9e-41 174.1 407 38.8
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.9e-41 174.1 388 42.5
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 2.5e-41 173.7 394 39.3
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.5e-41 173.7 393 43.8
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 3.2e-41 173.3 406 39.2
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 7.1e-41 172.2 392 42.3
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 9.3e-41 171.8 387 35.9
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 6.0e-40 169.1 397 37.3
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.3e-39 167.9 396 37.6
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.8e-39 167.5 403 40.7
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.9e-39 166.4 397 37.8
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 5.1e-39 166.0 402 40.0
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.5e-38 164.5 423 36.2
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.5e-38 164.5 416 37.3
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.9e-38 164.1 400 39.2
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 9.6e-38 161.8 408 36.5
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 4.8e-37 159.5 400 38.5
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 4.8e-37 159.5 392 38.5
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 6.9e-36 155.6 389 39.1
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 1.7e-34 151.0 383 40.2
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.8e-34 149.8 367 40.9
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 3.8e-34 149.8 374 38.0
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 5.0e-34 149.4 394 40.4
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 5.0e-34 149.4 398 35.7
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.1e-33 148.3 400 37.0
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.5e-33 147.1 369 41.5
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.5e-33 147.1 371 37.2
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 5.5e-33 146.0 394 39.1
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.6e-32 142.9 373 42.1
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 6.1e-32 142.5 395 34.9
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 7.9e-32 142.1 381 40.4
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.8e-31 141.0 416 38.2
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.9e-31 139.8 370 40.0
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 6.7e-31 139.0 358 36.3
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 8.7e-31 138.7 365 37.8
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.3e-30 136.7 397 32.5
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 4.3e-30 136.3 421 35.9
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 5.7e-30 136.0 366 37.2
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 9.7e-30 135.2 310 35.5
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.3e-29 134.8 334 40.7
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 1.3e-29 134.8 388 37.4
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 4.8e-29 132.9 365 39.7
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 6.3e-29 132.5 362 39.5
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.3e-29 132.5 74 95.9
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.4e-28 131.3 387 40.8
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.4e-28 131.3 375 37.6
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 5.3e-28 129.4 366 38.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 6.9e-28 129.0 389 35.7
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 2.0e-27 127.5 72 94.4
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 3.4e-27 126.7 358 38.5
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 3.4e-27 126.7 357 38.7
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 5.9e-27 125.9 323 38.1
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 3.8e-26 123.2 399 37.1
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.9e-25 120.9 361 37.4
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 4.2e-25 119.8 146 54.1
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.2e-24 118.2 381 37.0
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.2e-24 118.2 385 38.2
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.6e-24 117.9 382 39.3
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 1.6e-24 117.9 360 28.6
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.6e-24 117.9 371 30.5
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 4.6e-24 116.3 385 37.4
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 3.9e-23 113.2 395 37.0
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 6.7e-23 112.5 335 40.3
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.8e-23 112.1 304 35.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 3.3e-22 110.2 401 36.7
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 7.4e-22 109.0 383 33.9
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.7e-21 107.8 431 34.3
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.8e-20 104.4 390 33.3
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 3.1e-20 103.6 132 50.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 4.1e-20 103.2 392 35.5
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 2.0e-19 100.9 370 33.2
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.9e-18 97.1 368 33.7
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 5.0e-18 96.3 115 50.4
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.4e-17 94.7 132 46.2
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.5e-17 92.8 160 41.2
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.9e-16 89.0 133 45.9
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 2.3e-15 87.4 357 32.5
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.3e-15 87.4 389 30.1
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.0e-15 87.0 400 33.2
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.5e-14 84.7 132 43.9
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.4e-14 83.2 391 31.7
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 9.7e-14 82.0 275 30.9
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.3e-13 81.6 178 34.8
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 4.8e-13 79.7 346 31.5
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.4e-12 78.2 73 50.7
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 5.3e-12 76.3 168 33.3
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 2.6e-11 73.9 171 35.1
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.6e-11 73.9 73 49.3
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.5e-11 73.6 62 54.8
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 1.0e-10 72.0 165 35.2
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.3e-10 71.6 97 42.3
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.7e-10 71.2 124 35.5
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.9e-10 70.5 280 27.5
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.0e-10 69.7 62 53.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 6.5e-10 69.3 71 49.3
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 5.5e-09 66.2 110 45.5
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 7.2e-09 65.9 62 51.6
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.4e-09 65.5 194 30.4
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.2e-08 65.1 112 35.7
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 6.1e-08 62.8 50 62.0
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 8.0e-08 62.4 62 48.4
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.3e-07 60.8 51 60.8
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 3.0e-07 60.5 125 36.8
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 8.8e-07 58.9 133 33.1
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 3.3e-06 57.0 45 55.6
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.4e-06 56.6 135 34.1
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 5.7e-06 56.2 49 46.9
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 5.7e-06 56.2 61 42.6
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 7.5e-06 55.8 112 36.6


User provided reference genes

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