Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.7e-108 396.0 191 100.0
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 2.7e-106 388.7 190 96.8
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 2.5e-104 382.1 191 96.3
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 3.3e-104 381.7 190 95.3
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 3.3e-104 381.7 190 95.3
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 1.8e-94 349.4 190 86.8
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 1.9e-67 259.6 195 66.2
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 2.6e-61 239.2 193 65.8
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 1.1e-54 217.2 173 62.4
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 2.4e-54 216.1 182 63.2
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 5.3e-54 214.9 175 61.1
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 2.0e-53 213.0 182 62.1
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 1.3e-52 210.3 180 60.0
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 2.9e-52 209.1 184 59.8
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 6.5e-52 208.0 176 60.2
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 3.2e-51 205.7 181 60.2
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 9.3e-51 204.1 188 57.4
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 2.1e-50 203.0 195 54.9
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 7.9e-50 201.1 176 57.4
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.3e-49 200.3 180 58.3
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 1.8e-49 199.9 194 54.6
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 5.1e-49 198.4 180 57.8
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 1.1e-48 197.2 174 59.2
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 1.5e-48 196.8 173 59.5
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 1.6e-47 193.4 176 57.4
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 2.4e-46 189.5 195 53.8
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 3.1e-46 189.1 186 56.5
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 1.1e-43 180.6 186 51.1
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 7.2e-43 177.9 193 51.3
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 1.0e-41 174.1 197 50.8
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 1.0e-41 174.1 183 54.1
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 6.7e-41 171.4 202 48.0
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 1.8e-38 163.3 180 51.7
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 2.4e-38 162.9 187 49.2
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 2.6e-37 159.5 191 51.3
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 1.4e-35 153.7 195 45.1
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 1.9e-35 153.3 154 51.9
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 5.5e-35 151.8 192 47.4
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 9.4e-35 151.0 147 54.4
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 1.3e-31 140.6 144 50.0
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 1.8e-30 136.7 120 53.3
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 2.0e-29 133.3 112 54.5
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 5.9e-29 131.7 175 45.7
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 2.2e-28 129.8 151 45.0
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 2.9e-28 129.4 175 44.6
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 9.4e-27 124.4 150 43.3
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 6.1e-26 121.7 183 42.6
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 3.0e-25 119.4 180 40.6
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 6.7e-25 118.2 170 42.4
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 1.1e-24 117.5 160 45.0
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 1.5e-24 117.1 181 44.8
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 3.3e-24 115.9 174 42.0
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.7e-23 113.6 165 40.6
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 5.3e-22 108.6 174 37.9
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 2.0e-21 106.7 175 43.4
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 7.7e-21 104.8 177 37.9
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 1.3e-20 104.0 182 34.6
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 8.0e-18 94.7 147 38.8
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.8e-17 93.6 189 34.4
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 1.8e-17 93.6 179 36.9
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 2.0e-16 90.1 121 44.6
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 2.6e-16 89.7 162 40.7
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 1.3e-15 87.4 178 37.1
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 1.8e-14 83.6 70 60.0
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 7.0e-14 81.6 86 52.3
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 1.6e-13 80.5 62 64.5
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 2.9e-12 76.3 142 31.7
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 5.5e-11 72.0 87 49.4
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 1.6e-10 70.5 145 31.0
THA.LOC104802020 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 2.7e-10 69.7 145 31.7
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 6.1e-10 68.6 145 33.1
Lalb_Chr17g0339921 Lupinus albus HOM05D002113 ORTHO05D002124 6.1e-10 68.6 173 29.5
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 8.0e-10 68.2 72 48.6
Lalb_Chr15g0083531 Lupinus albus HOM05D000865 ORTHO05D000739 1.0e-09 67.8 144 32.6
arahy.Tifrunner.gnm1.ann1.T7PCV6 Arachis hypogaea HOM05D002113 ORTHO05D002124 1.8e-09 67.0 153 34.0
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 2.3e-09 66.6 182 30.8
TWI23G0711 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 2.3e-09 66.6 185 29.2
Eucgr.E00206 Eucalyptus grandis HOM05D002113 ORTHO05D002124 3.0e-09 66.2 141 32.6
PGR031G2634 Punica granatum HOM05D002113 ORTHO05D002124 3.0e-09 66.2 148 31.8
Glyma.07G076100 Glycine max HOM05D002113 ORTHO05D002124 5.2e-09 65.5 179 30.2
Thecc.01G366100 Theobroma cacao HOM05D002113 ORTHO05D002124 5.2e-09 65.5 178 27.5
Medtr8g432390 Medicago truncatula HOM05D002113 ORTHO05D002124 6.8e-09 65.1 194 30.4
Gohir.D12G108300 Gossypium hirsutum HOM05D002113 ORTHO05D002124 8.8e-09 64.7 145 29.7
Aqoxy4G02273 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 1.2e-08 64.3 202 29.7
unitig_8.g3340 Utricularia gibba HOM05D001109 ORTHO05D001051 1.2e-08 64.3 155 28.4
Medtr8g432400 Medicago truncatula HOM05D002113 ORTHO05D002124 1.5e-08 63.9 194 30.4
Cfa009470 Carpinus fangiana HOM05D000865 ORTHO05D000739 2.0e-08 63.5 168 28.0
Medtr8g432350 Medicago truncatula HOM05D002113 ORTHO05D002124 2.0e-08 63.5 194 29.4
Os06g0128800 Oryza sativa ssp. japonica HOM05D041313 ORTHO05D010232 2.0e-08 63.5 135 33.3
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 2.6e-08 63.2 82 45.1
Gohir.A12G104400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 2.6e-08 63.2 147 29.9
Gorai.008G117300 Gossypium raimondii HOM05D002113 ORTHO05D002124 2.6e-08 63.2 145 29.7
Hma1.2p1_0384F.1_g140860 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 2.6e-08 63.2 148 31.8
COL.COLO4_12607 Corchorus olitorius HOM05D002113 ORTHO05D002124 3.4e-08 62.8 146 27.4
Gohir.D12G108400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 3.4e-08 62.8 144 27.8
Eucgr.L01644 Eucalyptus grandis HOM05D002113 ORTHO05D002124 5.7e-08 62.0 192 27.6
Oeu004922.1 Olea europaea HOM05D001109 ORTHO05D001051 7.5e-08 61.6 145 30.3
Phvul.002G004000 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 7.5e-08 61.6 179 30.7
TWI23G0797 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 7.5e-08 61.6 143 29.4
CAN.G170.16 Capsicum annuum HOM05D002113 ORTHO05D002124 9.8e-08 61.2 150 28.7
Ciclev10022337m.g Citrus clementina HOM05D002113 ORTHO05D002124 9.8e-08 61.2 163 27.0
Lalb_Chr18g0051731 Lupinus albus HOM05D000865 ORTHO05D000739 1.3e-07 60.8 148 25.7
Psat4g152560 Pisum sativum HOM05D002113 ORTHO05D002124 1.3e-07 60.8 181 30.4
PGR031G2954 Punica granatum HOM05D002113 ORTHO05D002124 1.3e-07 60.8 151 29.1
Lj2C45T9 Lonicera japonica HOM05D001109 ORTHO05D001051 1.7e-07 60.5 146 29.5
SalBow5G1095 Salvia bowleyana HOM05D001109 ORTHO05D001051 1.7e-07 60.5 145 32.4
CDE08G0587 Ceratophyllum demersum HOM05D001109 ORTHO05D001051 2.2e-07 60.1 184 27.7
Medtr8g432370 Medicago truncatula HOM05D002113 ORTHO05D002124 2.2e-07 60.1 194 29.9
Dinv43883 Davidia involucrata HOM05D003005 ORTHO05D004170 2.8e-07 59.7 149 31.5
Gohir.A12G110100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 2.8e-07 59.7 157 28.7
Gorai.008G122700 Gossypium raimondii HOM05D001109 ORTHO05D001051 2.8e-07 59.7 157 28.7
Hma1.2p1_1336F.1_g276460 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 2.8e-07 59.7 147 28.6
Zm00001eb191520 Zea mays HOM05D001109 ORTHO05D001051 3.7e-07 59.3 146 30.8
Dinv24656 Davidia involucrata HOM05D001109 ORTHO05D001051 4.8e-07 58.9 170 29.4
Eucgr.E00199 Eucalyptus grandis HOM05D002113 ORTHO05D002124 4.8e-07 58.9 192 26.6
PSO478G4233 Papaver somniferum HOM05D002113 ORTHO05D002124 4.8e-07 58.9 144 27.8
CSS0011580 Camellia sinensis var. sinensis HOM05D001109 ORTHO05D001051 6.3e-07 58.5 139 28.1
Phvul.006G104400 Phaseolus vulgaris HOM05D001109 ORTHO05D001051 8.3e-07 58.2 142 28.9
COL.COLO4_06359 Corchorus olitorius HOM05D001109 ORTHO05D001051 1.1e-06 57.8 152 30.9
Nitab4.5_0000061g0060 Nicotiana tabacum HOM05D001109 ORTHO05D001051 1.1e-06 57.8 142 28.2
Nitab4.5_0006471g0020 Nicotiana tabacum HOM05D001109 ORTHO05D001051 1.1e-06 57.8 142 28.2
Aqoxy5G04035 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 1.4e-06 57.4 175 28.6
EL10Ac1g00332 Beta vulgaris HOM05D001109 ORTHO05D001051 1.4e-06 57.4 162 27.2
Phvul.008G073100 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 1.4e-06 57.4 152 30.3
Eucgr.L01642 Eucalyptus grandis HOM05D002113 ORTHO05D002124 1.8e-06 57.0 130 31.5
CAN.G484.84 Capsicum annuum HOM05D001109 ORTHO05D001051 2.4e-06 56.6 142 26.8
Duzib138G0142 Durio zibethinus HOM05D001109 ORTHO05D001051 2.4e-06 56.6 166 28.9
TAR626G0001 Trochodendron aralioides HOM05D001109 ORTHO05D011777 2.4e-06 56.6 145 26.2
Aqoxy7G00224 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 3.1e-06 56.2 156 26.9
Gohir.D12G113100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 3.1e-06 56.2 157 27.4
arahy.Tifrunner.gnm1.ann1.FNM63F Arachis hypogaea HOM05D001109 ORTHO05D001051 4.1e-06 55.8 148 28.4
arahy.Tifrunner.gnm1.ann1.M1XP5G Arachis hypogaea HOM05D001109 ORTHO05D001051 4.1e-06 55.8 148 28.4
CAN.G78.146 Capsicum annuum HOM05D001109 ORTHO05D001051 4.1e-06 55.8 143 25.9
MD01G1073700 Malus domestica HOM05D001109 ORTHO05D001051 4.1e-06 55.8 165 27.9
Peaxi162Scf00373g00122 Petunia axillaris HOM05D001109 ORTHO05D001051 4.1e-06 55.8 143 26.6
QL09p014635 Quercus lobata HOM05D002113 ORTHO05D002124 4.1e-06 55.8 145 28.3
VMungo1383G1522 Vigna mungo HOM05D002113 ORTHO05D002124 5.4e-06 55.5 179 30.2
COL.COLO4_29200 Corchorus olitorius HOM05D001109 ORTHO05D001051 7.0e-06 55.1 95 34.7
Sc01g0003090 Simmondsia chinensis HOM05D001109 ORTHO05D001051 7.0e-06 55.1 157 26.1
Nitab4.5_0000592g0410 Nicotiana tabacum HOM05D001109 ORTHO05D001051 9.1e-06 54.7 154 27.3
TWI59G0632 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 9.1e-06 54.7 128 31.2


User provided reference genes

Program Settings