Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.2e-186 656.0 418 100.0
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 2.0e-180 636.7 418 96.9
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.4e-178 630.6 418 96.2
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.8e-165 587.0 418 92.1
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.8e-149 533.9 434 83.6
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.2e-124 451.4 453 74.6
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.7e-107 394.4 468 66.9
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 4.8e-102 376.3 419 66.1
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 7.2e-98 362.5 458 64.6
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.4e-96 358.2 418 64.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 6.8e-96 355.9 368 71.7
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.5e-95 354.8 451 64.3
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 4.9e-94 349.7 431 64.0
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.3e-91 340.9 377 69.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 5.0e-91 339.7 444 61.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 5.0e-91 339.7 368 69.8
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 6.6e-91 339.3 407 64.6
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 7.5e-87 325.9 368 68.8
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.3e-86 325.1 380 65.0
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 6.4e-86 322.8 451 59.2
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.6e-84 318.2 423 60.5
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 2.0e-84 317.8 369 59.6
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.5e-82 311.6 418 59.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 1.5e-82 311.6 418 60.0
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 5.6e-82 309.7 418 60.3
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.1e-80 305.4 357 65.3
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 5.2e-80 303.1 379 62.3
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 8.9e-80 302.4 437 59.0
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.2e-79 302.0 412 60.7
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 3.4e-79 300.4 404 59.4
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 3.4e-79 300.4 363 66.9
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 7.5e-79 299.3 401 62.8
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 2.2e-78 297.7 403 60.0
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 2.4e-77 294.3 364 66.2
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 9.2e-77 292.4 353 65.4
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 4.6e-76 290.0 419 44.9
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 7.8e-76 289.3 383 46.7
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 1.7e-75 288.1 391 62.1
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 3.0e-75 287.3 383 46.5
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 3.0e-75 287.3 383 46.5
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.9e-75 287.0 389 61.2
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.3e-74 283.9 370 64.9
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 7.3e-74 282.7 457 57.5
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 7.3e-74 282.7 383 46.7
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 7.3e-74 282.7 363 65.8
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.2e-73 282.0 257 60.7
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 2.1e-73 281.2 402 60.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.6e-73 280.4 414 60.1
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 8.1e-73 279.3 414 59.4
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.4e-72 278.5 379 64.6
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 4.0e-72 276.9 348 66.4
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.2e-71 275.4 250 59.6
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.5e-71 275.0 352 63.9
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 5.8e-71 273.1 332 65.4
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 1.9e-69 268.1 258 56.6
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 9.2e-69 265.8 377 63.7
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 9.2e-69 265.8 355 64.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.1e-68 264.6 448 54.7
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 3.5e-68 263.8 394 57.6
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 8.6e-67 259.2 223 61.9
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 9.5e-66 255.8 172 71.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 1.2e-65 255.4 251 55.4
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.6e-65 255.0 443 54.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 2.8e-65 254.2 451 53.9
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.8e-64 251.5 266 54.9
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.3e-62 245.4 240 55.0
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.7e-62 245.0 208 58.2
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 2.2e-62 244.6 219 57.1
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 4.9e-62 243.4 221 56.6
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 8.4e-62 242.7 166 68.7
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.9e-61 241.5 222 55.4
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 1.4e-56 225.3 188 58.5
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.5e-55 221.9 235 50.2
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 5.8e-55 219.9 222 52.7
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.0e-51 209.1 174 58.6
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.7e-51 208.4 196 55.6
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 5.6e-50 203.4 268 71.6
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 7.9e-44 183.0 368 53.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 2.5e-42 177.9 144 56.9
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 5.6e-42 176.8 238 69.3
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 5.6e-42 176.8 167 55.1
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.8e-41 174.5 128 68.0
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 4.0e-40 170.6 174 49.4
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 2.7e-36 157.9 383 43.6
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 8.7e-35 152.9 92 77.2
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 2.7e-28 131.3 172 41.3
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.3e-27 129.0 117 48.7
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.3e-27 129.0 117 48.7
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.9e-26 125.2 177 44.6
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.9e-26 125.2 204 77.9
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 8.2e-25 119.8 117 50.4
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 8.2e-25 119.8 117 50.4
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.8e-24 118.6 78 71.8
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 6.9e-24 116.7 122 48.4
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.3e-22 112.5 227 59.5
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 9.4e-21 106.3 174 37.4
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.0e-19 101.3 67 71.6
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 7.7e-15 86.7 162 37.0
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.6e-12 79.0 78 47.4
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 1.8e-08 65.5 53 54.7
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 2.0e-07 62.0 219 23.3
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 2.0e-07 62.0 126 28.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 3.4e-07 61.2 126 29.4
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 1.3e-06 59.3 178 23.6
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 6.5e-06 57.0 111 28.8


User provided reference genes

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