Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1362.1 682 100.0
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1312.0 688 96.2
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 0.0e+00 1299.3 683 96.0
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1297.0 683 95.9
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1293.5 684 95.9
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1243.4 686 92.3
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1134.4 688 83.7
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1120.5 688 82.6
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 2.1e-310 1068.5 696 78.6
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 4.3e-308 1060.8 691 79.0
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 7.1e-303 1043.5 686 78.7
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 3.0e-301 1038.1 686 76.7
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.1e-301 1037.3 686 76.7
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 7.4e-300 1033.5 686 76.2
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.3e-299 1032.7 684 76.8
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 3.7e-299 1031.2 668 78.6
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 3.1e-298 1028.1 670 77.5
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.9e-295 1018.8 701 74.9
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.1e-294 1015.4 684 75.1
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.7e-294 1015.0 661 77.0
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 7.9e-294 1013.4 686 75.5
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 5.1e-293 1010.7 685 76.4
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.7e-293 1010.4 690 74.3
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.3e-292 1008.1 600 83.8
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.7e-292 1007.3 684 75.1
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.2e-291 1005.4 685 76.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 2.8e-291 1005.0 669 75.6
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 3.7e-291 1004.6 600 83.3
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 8.2e-291 1003.4 668 76.3
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 5.3e-290 1000.7 685 76.2
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 3.4e-289 998.0 668 75.3
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 7.6e-289 996.9 626 79.9
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 5.5e-287 990.7 683 75.5
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 7.2e-287 990.3 684 73.5
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 6.1e-286 987.3 686 73.5
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 7.9e-286 986.9 601 82.4
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 1.0e-285 986.5 686 74.1
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 5.1e-285 984.2 681 73.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.9e-284 982.2 671 73.3
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 3.3e-284 981.5 685 73.0
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 4.3e-284 981.1 662 75.4
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 5.7e-284 980.7 689 72.7
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 1.7e-283 979.2 687 72.8
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 3.7e-283 978.0 668 74.0
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 5.3e-282 974.2 682 72.6
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 2.6e-281 971.8 693 72.0
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 4.5e-281 971.1 688 73.1
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 5.0e-280 967.6 663 73.2
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 8.5e-280 966.8 663 73.6
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 8.5e-280 966.8 663 73.2
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-279 966.1 667 73.6
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 2.5e-279 965.3 663 72.5
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.5e-279 965.3 668 73.5
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 5.5e-279 964.1 601 79.7
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.6e-278 962.6 683 71.4
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 6.1e-278 960.7 685 72.0
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 7.9e-278 960.3 679 71.6
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 3.0e-277 958.4 663 72.7
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.1e-276 956.4 665 73.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.7e-275 952.6 672 71.3
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.7e-275 952.6 683 71.4
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 4.8e-275 951.0 672 71.4
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.1e-274 949.9 672 71.3
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.8e-274 949.1 659 71.9
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 4.5e-273 944.5 555 86.3
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.7e-272 942.6 683 70.4
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 3.8e-272 941.4 657 72.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 6.5e-272 940.6 687 70.5
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 6.5e-272 940.6 663 70.9
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.1e-271 939.9 659 71.5
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.9e-271 939.1 671 71.5
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.2e-271 938.3 659 70.9
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 4.2e-271 937.9 609 75.9
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.1e-270 935.6 664 71.1
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 8.0e-270 933.7 600 77.0
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.0e-268 929.1 601 76.0
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 5.7e-268 927.5 664 69.7
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.3e-267 926.4 667 70.5
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 4.8e-267 924.5 667 70.5
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 4.8e-267 924.5 677 69.7
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 6.3e-267 924.1 667 70.8
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.7e-264 916.0 604 75.3
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 1.1e-263 913.3 667 70.0
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.5e-263 912.9 666 69.2
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 1.9e-263 912.5 667 69.9
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 4.2e-263 911.4 659 70.1
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 1.6e-262 909.4 602 74.4
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 2.3e-261 905.6 663 69.4
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 3.0e-261 905.2 679 68.3
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 5.2e-261 904.4 603 73.8
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 5.7e-260 901.0 601 75.2
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.8e-256 888.3 663 68.0
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 5.4e-250 867.8 752 60.6
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 3.9e-232 808.5 618 65.9
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 3.3e-231 805.4 538 75.3
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 6.2e-230 801.2 663 64.4
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 9.8e-228 793.9 529 74.3
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.1e-223 780.4 680 59.6
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.8e-221 773.1 789 53.6
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.3e-219 766.9 668 61.2
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 3.4e-212 742.3 479 79.5
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.8e-211 738.8 784 49.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.9e-210 736.5 847 48.8
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.9e-210 736.5 770 50.0
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 1.5e-207 726.9 611 60.6
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.2e-204 717.2 868 45.5
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 2.7e-201 706.1 470 75.3
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.8e-187 659.1 423 78.0
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.5e-186 656.4 641 52.3
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.6e-169 599.0 538 59.7
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 7.9e-161 571.6 556 53.6
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 4.2e-154 549.3 449 65.7
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 1.9e-130 470.7 307 75.2
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 7.3e-122 442.2 393 60.6
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 9.5e-114 415.2 260 77.7
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.6e-105 387.9 368 55.4
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 6.8e-96 355.9 215 79.5
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.4e-93 348.2 263 65.8
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 8.1e-89 332.4 545 39.6
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.8e-81 307.4 336 48.8
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.8e-64 251.5 155 75.5
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.1e-43 180.3 140 65.7
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.1e-37 162.5 149 56.4
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 2.5e-37 161.4 320 34.4
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 8.0e-12 76.6 73 61.6
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 2.3e-11 75.1 68 63.2
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.5e-10 70.1 49 71.4
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 9.8e-10 69.7 47 66.0
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.3e-06 59.3 48 60.4
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 8.6e-06 56.6 39 69.2


User provided reference genes

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