Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.4e-142 508.8 255 100.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.4e-134 482.3 245 98.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.6e-133 477.2 245 97.1
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.6e-133 477.2 245 97.1
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.6e-133 477.2 245 97.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 9.9e-133 476.9 245 97.1
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.7e-132 476.1 245 97.1
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 3.2e-131 471.9 245 95.5
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.4e-105 386.7 247 79.8
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.0e-105 385.6 246 79.3
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.2e-100 369.4 248 77.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.5e-99 366.7 246 76.8
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.9e-99 366.3 248 76.6
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.4e-97 360.1 246 75.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.4e-97 360.1 245 75.9
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.3e-97 359.4 246 74.4
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.9e-97 358.6 246 75.2
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 5.2e-97 358.2 249 74.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-96 357.1 246 74.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-96 357.1 246 74.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-96 356.7 247 74.1
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 7.4e-96 354.4 248 74.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 8.2e-95 350.9 248 73.0
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 5.3e-94 348.2 246 73.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 5.3e-94 348.2 246 72.4
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 5.3e-94 348.2 246 72.8
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.1e-94 347.4 245 72.7
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.0e-93 346.3 249 73.1
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.0e-93 346.3 245 71.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.6e-93 345.9 246 72.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.6e-93 345.9 246 72.4
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.5e-93 345.5 246 70.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.5e-93 345.5 252 71.0
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.0e-92 344.0 246 72.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.3e-92 343.6 245 73.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-92 342.8 246 70.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.2e-92 342.8 246 70.3
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 3.8e-92 342.0 245 71.4
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 5.0e-92 341.7 251 71.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.5e-92 340.9 254 68.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 8.5e-92 340.9 249 71.5
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.1e-91 340.5 245 70.2
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.5e-91 340.1 246 71.1
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.5e-91 339.3 246 71.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 4.2e-91 338.6 246 71.1
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 5.5e-91 338.2 263 67.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 5.5e-91 338.2 247 71.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.2e-90 337.0 245 70.6
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.2e-90 337.0 247 71.3
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.0e-89 332.4 248 70.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.0e-89 332.4 248 70.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.8e-89 330.9 246 69.9
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.2e-88 330.5 246 70.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.5e-88 330.1 246 68.7
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.0e-88 329.7 249 67.5
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.0e-88 329.7 247 69.6
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 3.4e-88 328.9 249 68.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 9.7e-88 327.4 247 70.4
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 9.7e-88 327.4 244 70.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.7e-87 326.6 251 68.5
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.2e-87 326.2 246 69.1
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.8e-87 325.1 244 69.7
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 8.3e-87 324.3 247 69.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.8e-86 323.2 249 70.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 4.1e-86 322.0 247 67.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 4.1e-86 322.0 252 69.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.1e-86 322.0 252 69.0
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 5.3e-86 321.6 249 69.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 7.0e-86 321.2 252 67.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.2e-85 320.5 247 68.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.2e-85 320.5 312 57.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.6e-85 320.1 247 69.2
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 7.7e-85 317.8 258 66.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 7.7e-85 317.8 246 66.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.7e-85 317.8 247 68.4
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.2e-84 316.2 236 70.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 8.5e-84 314.3 244 67.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.5e-84 314.3 242 66.5
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.1e-83 313.9 216 71.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-83 313.9 243 69.5
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.5e-83 313.5 246 65.9
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.5e-83 311.6 242 66.9
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.5e-83 311.6 242 64.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 7.2e-83 311.2 240 67.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-82 310.1 247 65.6
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.6e-82 308.9 236 67.4
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.0e-82 307.8 237 68.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 8.0e-82 307.8 242 64.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-81 307.0 246 65.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.3e-81 306.2 242 64.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.3e-81 306.2 244 65.6
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.3e-81 306.2 245 65.3
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.0e-81 305.8 246 64.6
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.0e-81 305.8 246 65.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 5.2e-81 305.1 246 64.6
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 5.2e-81 305.1 242 64.9
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 6.8e-81 304.7 244 64.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 8.8e-81 304.3 243 66.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.2e-80 303.9 246 64.6
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.5e-80 303.5 248 64.9
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.6e-80 302.8 251 63.3
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.4e-80 302.0 232 70.3
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 7.5e-80 301.2 237 68.8
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.8e-80 300.8 249 64.7
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.7e-79 300.1 245 64.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.7e-79 300.1 250 65.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.2e-79 299.7 319 53.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.7e-79 298.9 246 64.2
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 6.3e-79 298.1 257 63.0
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.8e-78 296.6 244 65.6
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 2.4e-78 296.2 255 64.3
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.1e-78 295.4 252 63.1
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-77 293.9 255 62.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.6e-77 293.5 199 72.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.0e-77 293.1 250 61.6
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.0e-76 290.8 213 69.0
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-76 290.4 255 62.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.3e-76 289.7 216 68.1
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.9e-76 289.3 237 65.0
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.0e-76 288.5 244 62.3
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 5.0e-76 288.5 241 65.1
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.5e-75 287.0 243 63.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 7.2e-75 284.6 264 61.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-74 283.9 244 61.9
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-74 283.9 244 61.9
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.2e-74 283.9 244 61.9
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.6e-74 283.5 227 66.1
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 8.0e-74 281.2 244 61.9
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.7e-71 273.5 250 58.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 6.3e-71 271.6 250 58.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.0e-69 266.5 248 56.9
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.5e-67 260.4 385 43.4
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.8e-65 253.4 248 54.8
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.2e-64 250.8 255 54.1
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 7.5e-64 248.1 247 56.3
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 6.4e-63 245.0 246 55.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-62 244.2 232 56.0
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.9e-60 235.7 237 55.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.5e-59 233.0 150 74.0
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 9.5e-59 231.1 251 53.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.8e-57 224.9 147 72.1
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.2e-56 224.2 246 52.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.1e-53 213.4 137 74.5
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.5e-51 204.5 215 54.4
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-50 203.0 168 63.7
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.2e-50 201.8 168 62.5
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.6e-45 185.7 194 55.2
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.1e-42 176.8 113 74.3
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.4e-41 173.3 268 40.3
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.1e-41 172.9 261 42.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 3.1e-41 172.9 116 73.3
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.1e-36 155.6 134 68.7
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 9.6e-35 151.4 128 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.9e-31 139.8 268 35.8
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.7e-29 133.3 98 71.4
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.0e-28 131.3 278 35.6
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.9e-23 112.5 93 60.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.2e-22 109.4 95 56.8
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 9.3e-22 108.2 87 57.5
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.7e-21 106.7 78 65.4
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-20 104.0 74 71.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 7.4e-19 98.6 74 67.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-18 97.8 119 53.8
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 2.2e-15 87.0 112 37.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.9e-15 85.9 78 57.7
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.1e-14 84.7 97 43.3
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 4.3e-11 72.8 133 42.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 8.2e-10 68.6 98 49.0
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-08 64.7 81 45.7
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.5e-08 64.3 152 32.2


User provided reference genes

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