Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2192.5 1170 100.0
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2047.7 1193 93.6
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2038.8 1194 93.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2037.7 1194 93.4
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 2037.3 1194 93.0
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1980.7 1193 90.4
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1196 86.6
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1919.4 1195 86.4
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1865.1 1195 84.1
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1189 83.2
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1857.0 1190 83.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1848.9 1190 83.4
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1833.5 1192 82.0
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1832.4 1195 82.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1830.8 1192 81.9
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1830.1 1194 79.9
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1829.7 1199 82.5
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1828.9 1192 81.8
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1826.6 1194 81.7
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1825.4 1195 80.2
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1823.9 1192 81.5
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1823.1 1196 80.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1817.4 1198 81.6
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1817.0 1194 81.2
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1816.6 1194 80.4
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1815.8 1195 80.8
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1814.3 1189 82.1
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1813.9 1196 80.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1812.7 1192 81.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1808.9 1192 82.0
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1807.3 1194 81.3
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1807.3 1194 78.8
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1807.0 1195 80.3
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1806.6 1192 80.7
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1805.8 1194 80.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1805.4 1192 81.5
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1803.1 1194 80.4
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1798.9 1193 80.9
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1797.3 1193 79.1
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1796.9 1194 80.1
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1796.6 1194 78.9
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1795.4 1195 79.8
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1792.3 1199 80.3
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1791.9 1194 80.2
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1791.2 1200 80.3
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1791.2 1197 80.1
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1788.9 1206 79.0
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1786.9 1195 80.7
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1786.9 1191 81.1
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1785.8 1195 80.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1785.4 1228 79.7
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1784.2 1195 79.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1784.2 1195 79.0
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1782.7 1196 80.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1782.7 1195 79.2
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1781.1 1202 80.3
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1781.1 1198 80.3
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1780.4 1194 79.0
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1778.5 1195 78.8
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1778.1 1199 79.4
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1775.4 1202 80.0
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1773.8 1193 79.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1773.8 1194 78.6
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1773.1 1194 80.0
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1773.1 1194 80.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1768.4 1200 79.2
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1768.1 1193 79.6
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1765.4 1213 78.8
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1765.0 1202 78.7
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1763.4 1194 78.5
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1763.0 1237 77.4
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1762.3 1202 78.7
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1759.6 1114 81.7
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1759.6 1241 76.1
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1756.9 1195 80.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1755.7 1197 78.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1747.3 1201 78.6
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1740.7 1120 79.9
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1736.5 1195 77.8
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1736.5 1194 78.6
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1733.4 1190 78.1
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1728.4 1182 78.8
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1728.0 1193 77.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1727.6 1195 76.8
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1721.8 1193 74.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1718.4 1192 78.4
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1701.4 1122 78.1
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1686.0 1200 77.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1672.9 1331 70.2
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1636.3 1196 71.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1632.8 1207 72.4
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1626.3 1194 71.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1591.2 1191 71.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1577.0 1091 75.8
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1545.0 1201 68.4
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1519.6 1179 72.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1486.9 1025 77.4
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1486.9 1193 65.7
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1474.5 1194 65.6
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1450.3 837 89.8
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1449.5 970 79.9
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1338.9 838 81.7
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1319.7 1189 59.9
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1306.2 1185 58.5
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1274.6 799 82.4
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1266.1 1187 56.9
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1244.6 1188 56.3
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1237.6 1203 56.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1209.5 797 77.8
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1082.4 818 70.0
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 1.5e-305 1053.1 694 79.8
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 2.9e-280 969.1 951 54.7
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.5e-273 945.3 1220 43.4
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 4.1e-266 922.2 576 84.5
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.5e-260 901.4 545 86.6
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.1e-254 883.2 599 79.0
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 6.2e-254 881.7 658 72.8
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.5e-252 877.1 619 75.9
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.9e-243 845.5 767 62.7
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.6e-230 803.9 541 74.1
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 6.9e-221 771.9 636 64.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 8.5e-195 685.3 465 75.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 2.1e-193 680.6 510 74.1
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.2e-186 656.8 426 78.6
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 4.9e-150 536.6 357 79.0
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 9.5e-130 469.2 377 73.2
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 5.2e-112 410.2 377 56.0
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.2e-110 404.8 285 72.6
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.3e-67 261.9 195 72.3
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.8e-65 255.0 168 82.7
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.2e-46 192.2 143 72.0
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.7e-42 177.6 112 85.7
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 6.6e-38 164.1 103 86.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 3.3e-37 161.8 109 82.6
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.2e-34 153.3 78 91.0
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.8e-32 146.0 87 80.5
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 3.8e-30 138.3 96 76.0
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.4e-18 98.2 97 53.6
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.4e-18 98.2 82 59.8
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 5.8e-18 97.8 84 69.0
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 7.8e-15 87.4 103 70.9
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.3e-13 81.6 51 74.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.6e-12 79.7 51 70.6
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.1e-12 79.3 51 72.5
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 6.6e-06 57.8 57 56.1


User provided reference genes

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