Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.0e-111 405.2 207 100.0
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.1e-84 315.1 196 85.2
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.8e-61 238.4 208 62.5
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.7e-59 232.6 207 62.8
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 8.8e-55 217.6 207 60.9
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.6e-54 216.1 207 58.9
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.6e-54 216.1 206 60.2
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.7e-54 214.9 206 58.7
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 5.7e-54 214.9 207 59.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 5.7e-54 214.9 202 58.9
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.7e-53 213.4 202 58.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.2e-53 213.0 207 58.0
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 6.3e-53 211.5 207 57.5
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.3e-53 211.5 202 57.9
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 6.3e-53 211.5 202 57.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.1e-52 210.7 207 57.5
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.4e-52 210.3 207 57.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-52 209.9 207 57.5
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-52 209.9 207 57.5
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.1e-52 209.1 202 58.4
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.1e-52 209.1 202 58.4
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 3.1e-52 209.1 199 58.8
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.1e-52 209.1 202 58.4
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 4.1e-52 208.8 209 58.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.1e-52 208.8 207 57.0
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 5.4e-52 208.4 207 55.6
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 7.0e-52 208.0 207 57.0
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 9.1e-52 207.6 207 56.0
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-51 207.2 202 57.9
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-51 207.2 202 57.9
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.2e-51 207.2 202 57.4
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.2e-51 207.2 207 58.0
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.6e-51 206.8 202 56.9
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.0e-51 206.5 207 55.6
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.7e-51 206.1 207 55.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 2.7e-51 206.1 207 56.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 2.7e-51 206.1 202 55.9
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 4.5e-51 205.3 207 56.5
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 7.7e-51 204.5 202 55.9
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 7.7e-51 204.5 202 57.4
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.3e-50 203.8 197 58.9
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.7e-50 203.4 207 57.5
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 2.3e-50 203.0 202 54.5
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.3e-50 203.0 207 56.5
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 5.0e-50 201.8 206 55.8
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 5.0e-50 201.8 206 55.8
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.1e-49 200.7 202 56.4
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.1e-49 200.7 207 55.1
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.1e-49 200.7 198 55.6
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.5e-49 200.3 205 55.6
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.9e-49 199.9 202 56.4
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.9e-49 199.9 202 55.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.9e-49 199.9 208 55.3
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.5e-49 199.5 202 54.0
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.3e-49 199.1 202 54.5
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 9.5e-49 197.6 202 54.0
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.2e-48 197.2 202 54.0
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 2.8e-48 196.1 202 55.0
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 3.6e-48 195.7 203 54.7
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 4.7e-48 195.3 207 52.2
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.1e-48 194.9 199 55.3
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.0e-47 194.1 195 55.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.0e-47 194.1 202 53.0
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.4e-47 193.7 207 53.6
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-47 193.7 223 48.4
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.3e-47 193.0 207 51.7
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.3e-47 193.0 208 51.0
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 2.3e-47 193.0 198 55.6
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 8.9e-47 191.0 208 50.5
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-46 190.7 202 52.0
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-46 190.7 202 52.0
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-46 190.3 200 53.0
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 4.4e-46 188.7 202 51.5
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 5.7e-46 188.3 238 46.6
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 9.8e-46 187.6 201 52.7
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.2e-45 186.4 198 54.0
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.3e-45 184.9 202 51.5
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 1.4e-44 183.7 202 52.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.4e-44 183.7 207 52.7
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 4.1e-44 182.2 216 48.6
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.0e-44 181.4 204 50.5
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.2e-43 180.6 199 48.7
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 4.5e-43 178.7 199 51.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 5.9e-43 178.3 199 51.3
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.0e-42 177.6 175 57.1
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 6.6e-42 174.9 189 50.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 2.5e-41 172.9 206 52.9
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 5.6e-41 171.8 175 54.3
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 5.6e-41 171.8 201 47.8
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.6e-40 170.2 198 49.0
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.8e-39 166.8 198 43.9
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.0e-39 166.0 202 49.0
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.0e-39 165.6 208 50.5
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 5.2e-39 165.2 209 49.3
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.2e-38 164.1 208 50.0
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 7.5e-38 161.4 198 48.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.9e-37 159.5 177 51.4
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.4e-36 156.4 100 83.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.0e-34 151.0 193 45.6
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.5e-33 147.1 202 42.1
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.5e-33 146.4 207 46.9
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.3e-33 146.0 200 43.5
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.6e-32 143.7 173 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.1e-32 143.3 198 42.9
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.8e-31 140.2 215 40.5
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.5e-30 137.1 216 40.3
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-29 134.0 212 42.5
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 7.0e-28 128.3 138 55.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 7.0e-28 128.3 150 50.0
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.2e-27 127.5 218 39.4
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.2e-27 127.5 199 40.7
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.1e-27 126.7 209 38.3
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.7e-27 126.3 134 53.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 3.5e-27 125.9 200 39.0
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 6.0e-27 125.2 210 39.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 3.0e-26 122.9 109 60.6
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 8.6e-26 121.3 100 61.0
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.1e-25 120.9 212 39.6
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 9.5e-25 117.9 213 36.2
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 3.6e-24 115.9 147 49.0
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.7e-24 115.5 206 40.3
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 8.1e-24 114.8 201 40.3
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.1e-23 114.4 201 39.8
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-23 114.0 103 59.2
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.8e-23 113.6 207 39.1
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.2e-22 110.9 88 64.8
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.4e-22 109.4 209 41.1
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 9.9e-22 107.8 184 41.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.7e-21 105.9 234 35.0
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 8.3e-21 104.8 197 38.6
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 8.3e-21 104.8 173 42.2
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.1e-20 104.4 197 38.6
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.1e-20 104.4 97 49.5
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.1e-19 100.1 182 37.9
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.7e-19 99.8 81 58.0
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 3.5e-19 99.4 163 38.7
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 3.0e-18 96.3 205 37.1
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 8.6e-18 94.7 70 65.7
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-16 90.1 70 62.9
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 4.7e-16 89.0 87 57.5
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 8.1e-16 88.2 106 47.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 8.9e-15 84.7 78 57.7
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-11 74.3 101 39.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 6.6e-10 68.6 81 46.9
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-07 60.5 45 62.2
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 9.0e-07 58.2 180 33.3


User provided reference genes

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