Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.8e-31 137.9 66 100.0
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 7.2e-19 96.7 45 95.6
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 8.0e-18 93.2 45 88.9
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 8.9e-17 89.7 46 84.8
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 1.2e-16 89.4 45 84.4
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 2.0e-16 88.6 45 82.2
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 2.6e-16 88.2 45 82.2
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 5.7e-16 87.0 45 77.8
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 9.8e-16 86.3 45 80.0
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 9.8e-16 86.3 45 80.0
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 1.3e-15 85.9 89 53.9
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.3e-15 85.9 69 65.2
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 1.3e-15 85.9 45 77.8
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.3e-15 85.9 45 77.8
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 2.2e-15 85.1 45 80.0
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 2.2e-15 85.1 45 80.0
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.2e-15 85.1 45 75.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 2.2e-15 85.1 45 77.8
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 2.2e-15 85.1 45 77.8
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 2.8e-15 84.7 45 80.0
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 2.8e-15 84.7 45 82.2
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 3.7e-15 84.3 45 82.2
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 3.7e-15 84.3 47 76.6
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 3.7e-15 84.3 45 77.8
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 4.9e-15 84.0 45 75.6
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 4.9e-15 84.0 48 77.1
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 6.3e-15 83.6 48 75.0
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 6.3e-15 83.6 45 77.8
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 8.3e-15 83.2 48 70.8
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 1.4e-14 82.4 45 71.1
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.8e-14 82.0 45 75.6
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 1.8e-14 82.0 45 73.3
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 1.8e-14 82.0 47 72.3
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.8e-14 82.0 45 75.6
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 3.1e-14 81.3 44 77.3
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 3.1e-14 81.3 45 77.8
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 4.1e-14 80.9 45 75.6
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 4.1e-14 80.9 45 75.6
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 5.4e-14 80.5 45 75.6
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 7.0e-14 80.1 45 68.9
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 9.2e-14 79.7 45 71.1
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 1.6e-13 79.0 45 73.3
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 2.0e-13 78.6 45 71.1
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 2.0e-13 78.6 48 66.7
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 2.0e-13 78.6 45 73.3
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 2.0e-13 78.6 45 73.3
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 2.7e-13 78.2 45 73.3
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 3.5e-13 77.8 45 71.1
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 3.5e-13 77.8 46 71.7
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 4.5e-13 77.4 45 71.1
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 5.9e-13 77.0 45 71.1
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 5.9e-13 77.0 45 71.1
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 7.8e-13 76.6 45 66.7
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.0e-12 76.3 65 55.4
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 1.3e-12 75.9 65 56.9
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.3e-12 75.9 45 73.3
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 1.3e-12 75.9 45 71.1
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 1.7e-12 75.5 45 66.7
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.7e-12 75.5 45 66.7
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.3e-12 75.1 51 64.7
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 2.3e-12 75.1 46 67.4
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 2.3e-12 75.1 45 71.1
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 2.3e-12 75.1 45 66.7
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.9e-12 74.7 45 73.3
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.9e-12 74.3 48 72.9
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.9e-12 74.3 48 72.9
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 5.0e-12 73.9 45 68.9
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 5.0e-12 73.9 45 68.9
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 6.6e-12 73.6 45 68.9
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 6.6e-12 73.6 45 68.9
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 6.6e-12 73.6 45 68.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 6.6e-12 73.6 45 68.9
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 6.6e-12 73.6 45 73.3
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 8.6e-12 73.2 48 70.8
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 8.6e-12 73.2 48 70.8
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 1.1e-11 72.8 61 62.3
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 1.1e-11 72.8 45 73.3
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.1e-11 72.8 45 68.9
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 1.5e-11 72.4 45 66.7
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.5e-11 72.4 49 65.3
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.9e-11 72.0 45 71.1
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 1.9e-11 72.0 45 66.7
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 2.5e-11 71.6 45 68.9
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 4.3e-11 70.9 45 71.1
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 7.3e-11 70.1 46 69.6
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 7.3e-11 70.1 45 66.7
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 9.5e-11 69.7 45 66.7
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 1.2e-10 69.3 45 64.4
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 1.6e-10 68.9 45 66.7
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 2.1e-10 68.6 50 64.0
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 3.6e-10 67.8 44 61.4
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 3.6e-10 67.8 44 59.1
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 8.0e-10 66.6 35 74.3
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 8.0e-10 66.6 44 56.8
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 1.4e-09 65.9 45 64.4
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 2.2e-07 58.5 83 38.6


User provided reference genes

Program Settings