Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 2048.1 1032 100.0
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1998.8 1039 97.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1984.9 1039 96.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1963.3 1032 96.6
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1950.6 1050 94.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1842.0 1032 90.2
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1738.4 1030 85.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1701.8 1033 83.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1598.9 1023 78.0
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1587.0 1024 78.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1559.7 1032 76.7
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1535.8 1024 76.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1535.4 981 78.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1520.4 1026 75.4
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1519.6 1039 74.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1519.6 1025 74.9
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1518.4 1028 74.5
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1508.0 1038 74.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1505.7 1027 74.7
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1499.2 1024 74.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1498.0 1030 74.1
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1493.0 1025 73.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1492.2 1025 74.1
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1489.2 1025 74.5
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1486.1 1028 73.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1030 73.4
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1025 73.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1482.2 1030 73.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 1029 73.9
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1478.0 1052 71.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1030 72.3
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1033 72.6
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1030 72.2
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1473.0 1030 72.2
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1469.5 1032 72.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1469.1 1030 72.8
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1468.0 1034 73.8
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1032 72.4
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1024 72.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1451.8 1026 71.7
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1449.5 1024 72.8
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1025 72.3
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1441.8 1033 71.3
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1441.0 1023 71.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1433.3 1026 71.2
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 1025 70.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 1073 68.8
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1424.5 1018 70.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1018 70.5
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1028 70.4
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 1028 70.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1414.4 1055 69.9
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1413.3 1026 69.9
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1029 70.7
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1062 69.5
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1411.4 1035 70.0
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1409.4 1027 70.6
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1409.4 989 72.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 1028 70.4
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 1027 70.5
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 1028 70.3
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 986 73.1
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1027 70.5
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1406.7 1027 70.4
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1405.6 1032 69.6
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1405.2 1102 66.8
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1404.4 1027 70.4
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 1062 68.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1035 69.8
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1401.0 1034 69.9
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1400.2 943 76.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1400.2 1002 71.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 1028 69.4
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1037 69.3
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1389.8 1027 69.5
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1388.2 1028 69.6
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1381.7 1048 68.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1044 67.8
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1369.4 1022 69.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1361.7 1029 67.5
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 1030 67.0
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1358.2 1037 66.6
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 1125 64.0
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1349.3 1042 66.3
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 1024 68.6
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1340.9 1024 68.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1034 65.3
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 1002 68.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1311.2 1025 66.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1310.4 1038 64.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 1041 64.4
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1291.2 1046 65.0
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 1047 63.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1281.2 1033 65.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1278.1 1033 64.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1274.2 1032 64.2
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 831 78.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1033 65.2
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1266.5 1005 65.4
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1024 64.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1261.5 1158 57.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1253.8 982 66.9
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1248.8 1191 56.4
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1240.3 964 66.6
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 1050 61.4
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1223.0 1055 61.8
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 1034 62.4
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1219.9 1026 62.9
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1218.8 1027 63.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1216.4 938 67.7
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1206.8 1025 63.2
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 875 71.3
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1204.5 1022 61.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1182.2 1039 59.6
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1167.9 1031 58.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1164.4 1029 59.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1147.9 1007 62.4
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1108.2 881 66.1
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1107.4 916 64.3
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1104.0 956 61.0
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 5.0e-300 1034.6 946 59.3
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 7.8e-277 957.6 618 77.7
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.1e-274 949.5 776 64.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.8e-273 946.4 891 57.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 8.9e-265 917.5 1061 49.4
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 3.5e-261 905.6 624 73.7
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.3e-259 899.0 1069 47.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.6e-248 862.8 1002 48.0
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.6e-245 853.6 645 68.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.2e-232 810.8 619 67.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.5e-232 808.9 1042 45.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.0e-231 807.7 1037 44.7
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.2e-218 763.5 1239 40.6
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.2e-210 734.9 895 44.4
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.6e-181 639.8 409 78.5
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.4e-169 601.3 378 79.4
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 5.6e-158 562.8 407 71.3
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 4.9e-154 549.7 461 64.4
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 7.1e-153 545.8 489 62.6
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.3e-150 536.6 589 50.8
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 5.2e-140 503.1 529 52.7
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 7.9e-104 382.9 255 76.9
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 3.0e-103 380.9 283 70.7
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 9.7e-102 375.9 205 84.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 7.9e-96 356.3 297 64.3
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 9.1e-84 316.2 271 64.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 6.5e-82 310.1 257 63.8
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 6.1e-80 303.5 871 28.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.3e-77 295.8 162 84.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.9e-73 282.0 150 86.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.4e-63 249.2 219 58.9
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-59 234.6 266 54.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 6.1e-56 223.8 327 44.3
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 4.1e-52 211.1 155 73.5
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.2e-47 194.1 114 76.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.6e-43 182.6 509 30.1
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 9.5e-41 173.3 129 69.8
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.1e-40 172.2 91 80.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.3e-39 168.7 198 50.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.3e-34 152.9 131 61.8
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 8.6e-34 150.2 168 48.8
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.8e-31 140.6 115 60.9
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.7e-29 136.0 77 75.3
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.6e-27 127.9 81 75.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.3e-26 125.6 108 61.1
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 9.9e-22 110.2 136 49.3
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.7e-19 102.1 79 65.8
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.7e-19 102.1 79 65.8
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.7e-19 102.1 79 65.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.3e-16 93.2 86 64.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.2e-16 90.9 78 52.6
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 2.7e-11 75.5 73 54.8
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 7.9e-11 73.9 79 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.8e-10 72.8 50 68.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-09 69.3 64 53.1


User provided reference genes

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