Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1327 Fragaria x ananassa HOM05D004658 ORTHO05D005927 1.3e-285 985.7 495 100.0
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 1.3e-245 852.8 450 94.2
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 6.4e-245 850.5 465 92.3
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 8.1e-232 807.0 450 91.3
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 1.1e-231 806.6 456 89.3
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 1.9e-217 759.2 408 92.2
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 2.0e-214 749.2 460 82.0
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 1.1e-204 716.8 461 79.6
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 1.3e-192 676.8 459 74.5
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 6.3e-192 674.5 456 74.1
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 7.0e-191 671.0 453 74.2
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 1.0e-189 667.2 461 74.8
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 1.3e-189 666.8 452 75.9
MD00G1179100 Malus domestica HOM05D004658 ORTHO05D005927 7.2e-188 661.0 429 78.6
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 9.4e-188 660.6 450 72.0
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 1.2e-187 660.2 441 74.1
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 5.2e-186 654.8 458 72.7
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 6.8e-186 654.4 451 74.3
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 8.8e-186 654.1 397 79.8
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 1.2e-185 653.7 459 72.3
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 2.0e-185 652.9 466 71.5
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 2.6e-185 652.5 462 72.5
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 4.4e-185 651.7 456 73.0
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 7.5e-185 651.0 459 72.1
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 2.8e-184 649.0 398 78.4
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 3.7e-184 648.7 451 73.8
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 6.3e-184 647.9 464 70.7
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 6.3e-184 647.9 451 71.4
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 1.4e-183 646.7 455 73.6
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 1.4e-183 646.7 454 72.0
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 7.0e-183 644.4 441 73.2
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 1.6e-182 643.3 445 72.4
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 1.6e-182 643.3 444 72.7
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 1.6e-182 643.3 395 79.2
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 2.0e-182 642.9 453 71.7
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 5.9e-182 641.3 453 70.4
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 1.9e-180 636.3 387 78.6
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 1.9e-180 636.3 447 71.8
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 3.2e-180 635.6 460 70.4
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 4.2e-180 635.2 470 68.9
Nitab4.5_0008277g0040 Nicotiana tabacum HOM05D004658 ORTHO05D005927 5.5e-180 634.8 462 69.3
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 7.2e-180 634.4 385 79.7
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 1.6e-179 633.3 456 69.1
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 1.8e-178 629.8 464 69.2
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 2.3e-178 629.4 460 68.0
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 4.0e-178 628.6 467 68.3
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 4.0e-178 628.6 488 66.8
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 6.8e-178 627.9 464 69.0
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 6.8e-178 627.9 379 78.1
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 8.8e-178 627.5 454 70.9
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 1.5e-177 626.7 384 78.9
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 1.5e-177 626.7 488 66.8
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 4.4e-177 625.2 382 76.4
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 5.7e-177 624.8 463 69.5
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 2.2e-176 622.9 419 72.8
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 2.2e-176 622.9 450 69.6
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 2.8e-176 622.5 394 75.6
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 3.1e-175 619.0 449 70.2
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 3.5e-174 615.5 351 82.9
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 5.9e-174 614.8 461 67.2
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 7.8e-174 614.4 451 69.0
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 7.8e-174 614.4 393 76.8
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 1.7e-173 613.2 452 69.9
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 1.7e-173 613.2 460 68.3
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 5.0e-173 611.7 426 70.4
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 6.6e-173 611.3 442 69.0
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 8.6e-173 610.9 426 72.1
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 1.5e-172 610.1 393 74.3
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 1.9e-172 609.8 452 69.5
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 2.5e-172 609.4 374 78.3
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 2.5e-172 609.4 447 67.6
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 1.6e-171 606.7 458 67.9
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 2.1e-171 606.3 461 67.5
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 6.1e-171 604.7 443 69.3
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 8.0e-171 604.4 473 66.8
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 1.0e-170 604.0 408 72.3
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 1.4e-170 603.6 462 66.7
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 1.4e-170 603.6 451 67.0
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.0e-170 602.1 464 65.1
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 5.2e-170 601.7 443 68.8
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 2.0e-169 599.7 393 74.8
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.6e-169 599.4 458 65.9
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 3.4e-169 599.0 451 68.1
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 4.4e-169 598.6 450 67.3
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 5.7e-169 598.2 447 67.3
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 5.7e-169 598.2 460 67.0
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 7.5e-169 597.8 390 74.1
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 1.7e-168 596.7 461 65.3
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 2.2e-168 596.3 451 66.5
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 4.9e-168 595.1 448 66.3
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 4.9e-168 595.1 466 64.8
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 3.2e-167 592.4 450 67.3
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 4.1e-167 592.0 438 68.0
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 2.7e-166 589.3 447 66.0
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 3.0e-165 585.9 354 76.6
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 5.0e-165 585.1 287 96.2
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 6.6e-165 584.7 457 64.3
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 8.6e-165 584.3 456 64.9
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 8.6e-165 584.3 394 70.3
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 8.6e-165 584.3 443 65.7
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 2.8e-163 579.3 344 79.1
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 3.4e-161 572.4 383 72.8
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 5.8e-161 571.6 403 68.0
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 2.2e-160 569.7 349 75.6
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 2.4e-151 539.7 401 65.1
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 2.4e-151 539.7 442 63.3
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.6e-150 537.0 388 66.5
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.3e-149 533.9 354 69.8
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 1.1e-148 530.8 313 78.3
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.5e-148 530.4 375 67.5
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 1.1e-143 514.2 421 60.6
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 2.7e-142 509.6 288 83.0
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 2.2e-136 490.0 357 69.7
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 7.3e-132 474.9 447 57.9
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.1e-131 473.4 397 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 3.6e-131 472.6 370 60.8
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.6e-129 466.5 378 59.3
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 1.0e-125 454.5 347 61.4
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 8.7e-125 451.4 349 65.6
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 8.7e-125 451.4 376 56.4
RcHm_v2.0_Chr5g0055721 Rosa chinensis HOM05D004658 ORTHO05D005927 5.8e-121 438.7 250 84.8
CBR_g25724 Chara braunii HOM05D004658 ORTHO05D000184 1.7e-112 410.6 383 51.4
Actinidia21401 Actinidia chinensis HOM05D004658 ORTHO05D005927 7.9e-102 375.2 208 82.2
ECA232G2110 Erigeron canadensis HOM05D004658 ORTHO05D005927 2.2e-91 340.5 356 52.2
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 2.5e-87 327.0 361 46.5
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 7.2e-87 325.5 375 44.0
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 4.5e-81 306.2 321 51.7
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 3.6e-78 296.6 364 45.1
Dinv33117 Davidia involucrata HOM05D004658 ORTHO05D005927 2.1e-62 244.2 224 58.9
Lj1C17G9 Lonicera japonica HOM05D004658 ORTHO05D005927 1.8e-61 241.1 253 54.2
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 2.1e-54 217.6 110 87.3
SMO200G0105 Selaginella moellendorffii HOM05D004658 ORTHO05D000832 1.9e-47 194.5 307 38.4
Os07g0689400 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 8.6e-40 169.1 127 59.8
SEGI_04992 Sequoiadendron giganteum HOM05D004658 ORTHO05D005927 2.1e-25 121.3 71 74.6
Actinidia21402 Actinidia chinensis HOM05D004658 ORTHO05D054698 1.3e-11 75.5 44 75.0
FAN27G1212 Fragaria x ananassa HOM05D000018 ORTHO05D001172 4.6e-09 67.0 29 96.6
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 4.3e-07 60.5 35 82.9


User provided reference genes

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