Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.1e-216 754.2 401 100.0
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.9e-186 656.0 401 90.5
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.6e-169 599.7 327 97.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 6.7e-160 567.8 401 79.1
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.1e-157 560.5 401 79.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 9.9e-111 404.4 413 59.8
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 4.0e-96 355.9 335 61.2
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.1e-82 311.2 429 49.0
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.3e-81 307.8 449 46.1
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.4e-80 303.5 417 49.6
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 3.4e-79 299.7 401 47.6
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.1e-77 294.7 412 46.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.9e-77 293.9 400 48.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.5e-77 293.5 405 48.4
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 5.5e-77 292.4 401 48.4
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 6.0e-76 288.9 429 46.2
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.3e-75 287.0 423 46.8
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.9e-75 286.2 446 43.9
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 8.7e-75 285.0 419 44.9
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.5e-74 283.5 414 46.4
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.3e-74 282.7 454 43.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 7.4e-74 282.0 438 46.3
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.6e-73 280.8 427 45.7
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.8e-73 280.0 424 45.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 6.3e-73 278.9 410 45.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.8e-72 277.3 427 45.7
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.3e-70 271.2 424 44.1
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 3.8e-70 269.6 406 46.8
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.1e-69 268.1 398 46.0
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.4e-69 267.7 426 43.4
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.2e-68 264.6 407 44.5
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.2e-68 264.6 409 43.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 2.1e-68 263.8 408 43.9
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.7e-68 263.5 406 45.1
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.6e-68 263.1 447 42.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 4.6e-68 262.7 435 42.5
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.6e-68 262.7 413 44.6
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.0e-67 261.5 406 45.1
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.8e-67 260.8 408 43.6
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.7e-67 258.8 428 43.2
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 6.7e-67 258.8 444 42.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.7e-67 258.5 414 44.9
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.9e-66 257.3 382 44.2
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.5e-66 256.9 608 34.7
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.3e-66 256.5 443 42.7
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.3e-66 256.1 431 44.5
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.3e-65 254.6 400 43.8
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.6e-65 254.2 212 64.2
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.6e-65 254.2 215 65.1
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.7e-65 253.1 406 44.3
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 8.2e-65 251.9 402 44.8
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 8.2e-65 251.9 407 43.2
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 4.1e-64 249.6 408 44.9
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 3.4e-63 246.5 403 43.4
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.2e-62 243.8 439 40.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.9e-62 243.4 402 42.8
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 5.0e-62 242.7 416 41.3
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.4e-61 241.1 199 64.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 5.5e-61 239.2 388 41.2
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 2.7e-60 236.9 409 41.1
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.6e-60 236.5 244 57.0
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 4.6e-60 236.1 410 39.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.8e-59 234.2 429 40.8
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 8.8e-59 231.9 404 42.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 8.8e-59 231.9 316 46.8
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.5e-58 231.1 409 40.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.4e-58 229.6 244 54.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 5.7e-58 229.2 437 39.1
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 9.7e-58 228.4 400 41.5
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.3e-57 228.0 415 38.8
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.2e-57 227.3 264 51.9
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 6.3e-57 225.7 404 39.4
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.8e-56 224.2 405 39.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 4.1e-56 223.0 399 40.6
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-55 221.5 432 38.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.0e-55 220.7 401 38.9
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.6e-55 220.3 228 55.7
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.7e-54 217.6 244 53.3
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 3.8e-54 216.5 422 41.7
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.1e-53 214.9 401 40.9
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 7.2e-53 212.2 204 56.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 9.4e-53 211.8 425 37.4
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.1e-52 210.7 398 42.0
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 2.1e-52 210.7 216 56.5
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.4e-51 208.0 524 34.4
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.8e-51 207.6 417 36.5
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.3e-51 207.2 160 65.0
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 4.4e-50 203.0 343 44.3
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.7e-49 201.1 409 38.6
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.8e-49 200.3 398 40.5
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.1e-48 198.4 376 42.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.1e-48 198.4 233 48.1
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 7.2e-45 185.7 407 37.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.6e-44 184.5 407 36.4
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.5e-42 177.9 401 35.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 9.7e-42 175.3 167 56.3
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.3e-41 174.9 130 64.6
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.1e-40 171.8 398 35.2
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.4e-40 171.4 203 48.8
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.1e-40 170.2 294 40.5
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 5.3e-40 169.5 398 34.9
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 5.3e-40 169.5 398 34.7
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.3e-38 164.9 205 49.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.2e-38 164.1 335 38.8
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.9e-37 161.0 218 43.1
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 8.0e-36 155.6 226 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.4e-34 149.8 151 52.3
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.0e-31 141.0 361 34.3
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 7.7e-31 139.0 337 35.0
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.8e-30 136.7 398 33.2
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.1e-29 135.2 198 43.9
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.8e-28 130.6 127 52.8
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 3.6e-28 130.2 226 38.5
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 6.8e-27 125.9 128 51.6
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.3e-25 121.7 248 37.9
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.6e-23 114.8 118 52.5
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.7e-23 114.0 109 55.0
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.8e-22 110.2 82 68.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 3.8e-22 110.2 89 61.8
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 3.3e-21 107.1 76 68.4
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.0e-20 102.4 266 34.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.5e-15 87.0 165 40.0
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.6e-14 82.4 116 40.5
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.5e-13 81.6 106 45.3
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 4.3e-13 80.1 112 39.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 4.3e-13 80.1 63 60.3
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.1e-12 77.8 324 28.4
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 2.1e-12 77.8 181 35.9
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.4e-11 75.1 186 34.4
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 6.8e-11 72.8 310 31.0
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.0e-10 71.2 43 72.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.3e-09 68.6 217 32.7
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.9e-09 67.4 284 32.4
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.9e-08 64.7 56 57.1
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 7.0e-08 62.8 52 57.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 7.0e-08 62.8 357 26.3
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.0e-07 61.2 86 41.9
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.5e-07 60.5 84 41.7
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 7.8e-07 59.3 84 41.7
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 7.8e-07 59.3 65 49.2
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-06 58.5 55 52.7
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-06 58.2 84 40.5


User provided reference genes

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