Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 6.3e-117 424.1 209 100.0
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 6.3e-117 424.1 209 100.0
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.8e-108 396.0 197 97.0
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 5.5e-105 384.4 216 88.4
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 5.9e-99 364.4 211 87.2
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 9.1e-92 340.5 223 79.4
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.2e-83 313.5 197 79.2
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.6e-83 313.2 197 79.2
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 6.6e-82 307.8 213 75.1
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 2.5e-81 305.8 205 76.1
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 7.2e-81 304.3 197 74.1
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 7.2e-81 304.3 193 75.6
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 2.6e-78 295.8 199 73.9
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 3.4e-78 295.4 197 74.6
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 4.1e-76 288.5 191 74.3
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 5.4e-76 288.1 196 72.4
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 9.2e-76 287.3 193 73.1
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 9.2e-76 287.3 196 72.4
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 3.5e-75 285.4 183 75.4
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 3.5e-75 285.4 193 72.0
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 3.5e-75 285.4 180 76.1
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 1.7e-74 283.1 197 69.0
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 8.6e-74 280.8 183 72.1
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 8.6e-74 280.8 193 69.9
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 2.5e-73 279.3 174 75.3
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 4.3e-73 278.5 173 77.5
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 4.3e-73 278.5 204 69.1
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 4.7e-72 275.0 195 69.7
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 8.0e-72 274.2 168 76.8
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 1.4e-71 273.5 212 65.1
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 4.0e-71 271.9 188 70.2
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 4.0e-71 271.9 186 73.7
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 8.9e-71 270.8 201 69.7
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 8.9e-71 270.8 192 68.2
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 3.4e-70 268.9 178 73.0
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 2.2e-69 266.2 205 67.8
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 2.9e-69 265.8 183 70.5
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 2.9e-69 265.8 176 71.6
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 4.9e-69 265.0 197 69.5
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 4.9e-69 265.0 208 64.4
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 6.4e-69 264.6 190 68.9
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 6.4e-69 264.6 171 71.9
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 8.3e-69 264.2 193 69.4
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 1.1e-68 263.8 203 64.0
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 1.9e-68 263.1 194 68.6
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 3.2e-68 262.3 171 75.4
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 3.2e-68 262.3 189 66.7
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 3.2e-68 262.3 197 64.0
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 4.1e-68 261.9 205 66.8
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 9.2e-68 260.8 172 72.1
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 1.2e-67 260.4 202 64.4
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.7e-67 259.2 195 67.7
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 4.6e-67 258.5 170 74.1
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 4.6e-67 258.5 208 65.4
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 4.6e-67 258.5 213 62.4
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 6.0e-67 258.1 177 69.5
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 7.8e-67 257.7 211 62.1
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 1.0e-66 257.3 203 66.0
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.3e-66 256.9 190 67.4
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.7e-66 256.5 184 69.6
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 1.7e-66 256.5 171 73.1
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 2.3e-66 256.1 181 71.8
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 3.0e-66 255.8 163 74.2
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 5.0e-66 255.0 194 63.9
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.1e-65 253.8 165 72.7
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 1.5e-65 253.4 165 73.3
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 2.5e-65 252.7 163 72.4
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 2.5e-65 252.7 178 70.8
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 3.3e-65 252.3 163 73.6
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 3.3e-65 252.3 177 70.1
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 3.3e-65 252.3 164 73.2
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 4.3e-65 251.9 200 66.5
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.2e-64 250.4 163 71.2
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 2.1e-64 249.6 161 73.9
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 2.8e-64 249.2 193 64.8
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.4e-63 246.9 233 58.4
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.8e-63 246.5 185 64.9
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 2.3e-63 246.1 191 63.9
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 2.3e-63 246.1 191 63.9
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 2.3e-63 246.1 191 63.9
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 5.2e-63 245.0 196 66.8
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 8.9e-63 244.2 191 62.8
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.2e-62 243.8 185 68.6
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 2.6e-62 242.7 191 62.8
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 2.6e-62 242.7 189 65.1
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 3.4e-62 242.3 169 73.4
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 4.4e-62 241.9 165 70.9
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 2.2e-61 239.6 173 65.9
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.9e-61 239.2 204 59.8
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 1.4e-60 236.9 142 75.4
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 3.2e-60 235.7 175 66.9
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 1.2e-59 233.8 196 63.3
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.6e-59 233.4 191 62.8
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 3.0e-58 229.2 196 61.2
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.0e-58 229.2 203 58.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.3e-57 225.3 172 67.4
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 7.3e-57 224.6 145 73.8
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 7.3e-57 224.6 171 68.4
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 2.8e-56 222.6 124 83.1
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.1e-55 219.2 202 56.4
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 3.2e-52 209.1 141 65.2
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 6.0e-51 204.9 175 58.9
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.1e-50 201.8 125 79.2
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 8.1e-48 194.5 138 65.2
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 1.2e-46 190.7 131 69.5
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 5.8e-46 188.3 154 53.2
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 2.5e-41 172.9 162 57.4
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 3.3e-41 172.6 111 68.5
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.4e-38 162.5 137 62.8
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.4e-38 162.5 137 62.8
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.7e-34 150.2 92 79.3
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 5.1e-34 148.7 133 57.9
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.1e-33 147.5 119 62.2
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.3e-32 144.1 149 46.3
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 4.8e-32 142.1 122 53.3
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 2.6e-30 136.3 128 46.9
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 2.6e-30 136.3 81 81.5
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 3.4e-30 136.0 83 79.5
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 2.2e-29 133.3 123 57.7
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 5.4e-28 128.6 134 50.7
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 3.3e-25 119.4 121 52.1
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.1e-16 90.1 114 35.1
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 2.2e-08 63.5 147 29.3
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 1.1e-07 61.2 39 66.7


User provided reference genes

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