Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.1e-64 248.8 123 100.0
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 6.2e-64 247.3 123 99.2
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 5.2e-63 244.2 123 98.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 5.2e-63 244.2 123 98.4
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 1.5e-57 226.1 123 87.8
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 2.5e-57 225.3 123 91.1
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 7.3e-57 223.8 123 87.8
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.4e-55 218.8 123 84.6
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 4.0e-55 218.0 122 85.2
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 6.9e-55 217.2 123 83.7
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 84.6
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 7.6e-54 213.8 123 83.7
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 9.9e-54 213.4 123 83.7
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 80.5
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 2.2e-53 212.2 121 82.6
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 2.9e-53 211.8 123 82.9
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 4.9e-53 211.1 123 82.9
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 4.9e-53 211.1 123 79.7
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.4e-53 210.3 123 79.7
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 80.5
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 81.3
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 79.7
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 80.5
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.4e-52 209.5 124 81.5
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.9e-52 209.1 124 83.9
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 78.9
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 2.4e-52 208.8 123 82.1
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.4e-52 208.8 123 80.5
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.4e-52 208.8 123 82.1
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 3.2e-52 208.4 123 78.9
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 3.2e-52 208.4 123 78.9
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 3.2e-52 208.4 124 82.3
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 78.9
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.4e-52 207.6 123 78.9
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 5.4e-52 207.6 123 80.5
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 7.1e-52 207.2 123 82.1
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 7.1e-52 207.2 123 81.3
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 78.9
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 9.3e-52 206.8 123 79.7
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 9.3e-52 206.8 123 78.9
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 1.2e-51 206.5 123 79.7
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.2e-51 206.5 123 81.3
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 78.9
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 77.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 78.9
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 78.9
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 81.3
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 2.1e-51 205.7 123 78.0
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 2.1e-51 205.7 123 78.0
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 2.7e-51 205.3 123 81.3
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 2.7e-51 205.3 123 80.5
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 3.5e-51 204.9 124 81.5
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 3.5e-51 204.9 123 78.0
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 4.6e-51 204.5 123 80.5
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 4.6e-51 204.5 123 78.0
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 6.0e-51 204.1 123 79.7
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 6.0e-51 204.1 121 80.2
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 7.8e-51 203.8 123 79.7
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 1.0e-50 203.4 125 80.0
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.3e-50 203.0 121 77.7
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-50 203.0 122 75.4
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.7e-50 202.6 116 84.5
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 2.3e-50 202.2 124 79.8
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.3e-50 202.2 123 78.0
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 3.0e-50 201.8 123 76.4
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 3.0e-50 201.8 123 78.9
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 3.0e-50 201.8 124 78.2
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 3.9e-50 201.4 125 78.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 3.9e-50 201.4 123 78.0
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 5.1e-50 201.1 123 79.7
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 6.6e-50 200.7 125 79.2
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 6.6e-50 200.7 125 78.4
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 8.7e-50 200.3 124 77.4
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 74.8
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 75.6
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.5e-49 199.5 124 76.6
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.5e-49 199.5 123 78.9
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.5e-49 198.7 125 77.6
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.5e-49 198.7 125 77.6
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 4.3e-49 198.0 122 75.4
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 76.4
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 77.2
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 4.3e-49 198.0 116 81.9
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 76.4
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 9.6e-49 196.8 123 74.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 1.3e-48 196.4 129 74.4
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.3e-48 196.4 124 78.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 123 74.0
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 76.8
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.6e-48 196.1 123 75.6
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.6e-48 196.1 121 75.2
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.6e-48 194.9 123 73.2
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 4.8e-48 194.5 126 77.8
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 4.8e-48 194.5 126 77.8
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 8.1e-48 193.7 126 77.0
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.1e-47 193.4 123 75.6
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.4e-47 193.0 126 76.2
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 1.8e-47 192.6 116 78.4
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.4e-47 192.2 124 77.4
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 2.4e-47 192.2 123 74.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 3.1e-47 191.8 128 73.4
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 3.1e-47 191.8 128 73.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 4.0e-47 191.4 124 77.4
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 4.0e-47 191.4 122 73.8
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.3e-47 191.0 125 76.8
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 5.3e-47 191.0 125 73.6
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 9.0e-47 190.3 123 73.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 9.0e-47 190.3 124 72.6
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.2e-46 189.9 125 74.4
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.5e-46 189.5 125 76.0
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.6e-46 188.7 125 76.0
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.6e-46 188.7 125 74.4
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.8e-46 187.6 125 75.2
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.8e-46 187.6 124 75.0
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 9.9e-46 186.8 125 72.8
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.3e-45 186.4 125 73.6
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.7e-45 186.0 125 74.4
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.7e-45 186.0 125 72.8
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.7e-45 186.0 126 73.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 2.9e-45 185.3 127 70.9
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 2.9e-45 185.3 127 70.9
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 1.4e-44 183.0 123 66.7
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.9e-44 182.6 127 70.1
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.4e-44 182.2 125 70.4
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 4.2e-44 181.4 116 75.0
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 5.4e-44 181.0 118 75.4
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 5.4e-44 181.0 126 70.6
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 5.4e-44 181.0 121 69.4
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 9.3e-44 180.3 123 67.5
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.6e-43 179.5 121 72.7
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.1e-43 179.1 123 67.5
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.7e-43 178.7 125 70.4
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 3.5e-43 178.3 125 69.6
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 4.6e-43 177.9 123 64.2
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 7.9e-43 177.2 125 70.4
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 7.9e-43 177.2 125 71.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.0e-42 176.8 121 69.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.0e-42 176.8 121 69.4
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.3e-42 176.4 123 69.1
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 5.1e-42 174.5 124 69.4
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.9e-41 172.6 118 66.9
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 3.3e-41 171.8 121 67.8
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 5.6e-41 171.0 115 68.7
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 5.6e-41 171.0 123 69.9
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 9.6e-41 170.2 123 63.4
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 2.1e-40 169.1 122 67.2
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 2.1e-40 169.1 114 71.1
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 4.8e-40 167.9 113 74.3
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 1.4e-39 166.4 122 68.9
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.8e-39 166.0 109 69.7
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.9e-38 160.2 116 63.8
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 3.5e-35 151.8 122 59.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.6e-35 151.4 88 77.3
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 6.0e-35 151.0 123 59.3
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 9.6e-33 143.7 132 52.3
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.0e-30 136.0 106 62.3
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 7.6e-30 134.0 123 57.7
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.0e-29 133.7 131 48.1
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.0e-26 122.1 124 49.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.7e-25 117.1 106 54.7
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 2.2e-24 115.9 132 43.2
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 1.1e-23 113.6 122 48.4
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.4e-23 112.5 115 51.3
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 2.0e-22 109.4 68 75.0
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 5.0e-21 104.8 123 46.3
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 6.5e-21 104.4 63 69.8
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.3e-16 87.8 57 66.7
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 5.1e-10 68.2 39 71.8


User provided reference genes

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