Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.3e-147 525.8 316 100.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.5e-141 506.5 318 97.2
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.0e-139 498.8 320 95.3
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 6.8e-139 497.7 334 92.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 2.3e-118 429.5 323 84.2
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.0e-90 336.7 335 70.1
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 8.4e-89 331.3 335 69.3
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.2e-87 327.4 336 65.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.7e-86 323.6 337 64.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.9e-86 322.4 335 68.1
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 5.6e-85 318.5 329 63.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.1e-83 314.3 330 62.7
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 6.9e-83 311.6 340 65.9
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.2e-80 302.8 336 58.6
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 4.2e-80 302.4 325 61.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 5.4e-80 302.0 344 62.2
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.7e-79 299.7 325 61.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.3e-78 297.4 329 56.5
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 8.7e-78 294.7 333 54.4
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 8.7e-78 294.7 330 60.6
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.9e-77 293.5 358 52.8
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.6e-77 292.0 324 56.5
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 9.6e-77 291.2 339 59.6
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 6.2e-76 288.5 324 59.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.1e-75 287.7 330 55.8
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 4.0e-75 285.8 328 57.3
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.4e-74 282.7 338 55.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 4.5e-74 282.3 326 53.4
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 8.4e-73 278.1 326 62.0
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.4e-72 277.3 337 59.1
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.9e-72 276.9 341 56.9
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 5.4e-72 275.4 321 53.9
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 7.1e-72 275.0 313 59.7
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.3e-72 274.6 336 54.8
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.6e-71 273.9 337 60.2
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.7e-71 273.1 336 53.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 7.9e-71 271.6 346 55.8
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.3e-70 270.0 327 57.8
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.5e-69 267.3 331 60.4
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.3e-69 266.2 324 53.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 9.6e-69 264.6 315 61.0
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.5e-66 257.3 316 59.5
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.6e-66 256.5 344 55.5
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.6e-66 255.0 293 63.8
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 7.6e-66 255.0 306 53.3
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.3e-65 254.2 331 54.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.5e-64 250.0 335 55.2
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 3.2e-64 249.6 342 56.1
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 7.1e-64 248.4 326 55.8
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.7e-63 246.5 307 56.4
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 4.6e-63 245.7 310 52.9
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 4.6e-63 245.7 339 52.8
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 7.9e-63 245.0 307 54.7
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.0e-62 244.6 336 56.2
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 5.1e-62 242.3 333 54.1
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 6.7e-62 241.9 506 42.9
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.1e-61 241.1 295 52.5
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.9e-61 240.4 331 52.3
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.9e-61 240.4 304 56.2
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.3e-61 239.6 307 58.6
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 3.3e-61 239.6 323 51.7
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 4.3e-61 239.2 342 52.9
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 4.3e-61 239.2 331 47.4
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.3e-60 237.7 333 54.4
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.1e-60 236.9 332 47.9
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.8e-60 236.5 322 46.6
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.7e-60 236.1 335 56.1
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 3.7e-60 236.1 328 56.7
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 4.8e-60 235.7 322 48.8
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 4.8e-60 235.7 333 55.6
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 6.2e-60 235.3 322 49.4
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.2e-60 235.3 331 52.3
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.1e-59 234.6 299 56.5
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.1e-59 234.6 259 61.4
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 3.1e-59 233.0 308 50.0
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 4.1e-59 232.6 331 55.0
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 6.9e-59 231.9 336 47.0
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 7.6e-58 228.4 369 46.3
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.3e-57 227.6 255 57.6
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.8e-57 226.1 338 50.3
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 6.5e-57 225.3 328 45.4
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.9e-56 223.8 289 48.4
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.2e-55 221.1 259 64.5
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.3e-54 217.6 327 46.2
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.1e-54 215.7 327 49.5
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 6.7e-54 215.3 255 62.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 6.7e-54 215.3 335 46.9
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.5e-53 214.2 314 51.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.5e-53 214.2 324 51.9
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 2.5e-53 213.4 346 41.9
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.5e-53 213.4 309 54.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 3.3e-53 213.0 283 55.8
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 8.2e-52 208.4 324 44.1
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.1e-51 208.0 288 44.8
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.1e-51 208.0 288 44.8
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.4e-51 207.6 331 47.1
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 3.1e-51 206.5 286 45.1
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 5.3e-51 205.7 296 44.6
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.2e-50 204.5 236 59.7
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.2e-49 200.3 331 50.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.9e-49 199.9 405 42.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.9e-49 199.9 333 45.9
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 3.8e-49 199.5 333 42.6
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.2e-48 196.4 287 47.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.9e-46 189.5 287 44.6
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 5.1e-46 189.1 351 40.5
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.5e-45 187.6 331 41.7
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 7.4e-45 185.3 289 41.5
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.4e-45 185.3 311 45.3
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 9.7e-45 184.9 318 47.8
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.7e-44 184.1 334 47.3
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.8e-43 180.6 281 45.6
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.4e-42 176.4 251 53.4
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 9.4e-40 168.3 345 36.5
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 7.4e-37 158.7 352 36.4
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.8e-36 156.8 294 39.5
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 8.2e-36 155.2 318 38.7
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.0e-35 152.1 294 39.1
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.7e-33 147.5 333 35.1
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.7e-33 147.5 282 40.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 7.2e-32 142.1 296 41.6
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 6.1e-31 139.0 287 34.8
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 8.0e-31 138.7 281 35.6
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.0e-30 136.7 290 34.1
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.6e-29 133.7 296 38.5
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 7.7e-26 122.1 190 41.1
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 5.0e-25 119.4 230 38.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.4e-22 111.3 183 41.5
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.3e-22 110.5 116 60.3
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 4.0e-22 109.8 90 64.4
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.4e-21 106.3 256 44.5
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 5.7e-21 105.9 350 34.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.7e-18 97.1 255 33.7
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 3.5e-18 96.7 84 64.3
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 4.2e-16 89.7 258 36.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 5.5e-16 89.4 113 53.1
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.1e-15 87.4 79 57.0
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.1e-15 87.4 104 51.9
RcHm_v2.0_Chr4g0401411 Rosa chinensis HOM05D034610 ORTHO05D006058 2.1e-15 87.4 80 63.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-14 84.7 96 49.0
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.0e-14 83.2 291 27.8
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 6.8e-14 82.4 89 51.7
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 8.3e-12 75.5 89 50.6
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.1e-11 75.1 117 46.2
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.1e-11 72.0 75 58.7
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 7.7e-10 68.9 113 44.2
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 5.0e-09 66.2 110 43.6
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 8.6e-09 65.5 81 45.7
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 1.1e-08 65.1 308 30.2


User provided reference genes

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