Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.7e-68 261.2 140 100.0
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 2.3e-67 258.8 140 99.3
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.3e-67 258.8 140 99.3
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.3e-67 258.8 140 99.3
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.1e-67 258.5 140 98.6
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 8.1e-60 233.8 141 92.2
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.3e-54 216.5 139 84.2
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 3.0e-54 215.3 137 86.1
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.1e-51 206.8 141 77.3
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 1.4e-51 206.5 143 80.4
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 7.6e-50 200.7 143 79.0
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 9.9e-50 200.3 143 78.3
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 1.7e-49 199.5 132 83.3
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 2.2e-49 199.1 142 76.8
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 4.9e-49 198.0 131 83.2
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 4.9e-49 198.0 142 74.6
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 6.4e-49 197.6 142 77.5
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 4.1e-48 194.9 142 78.9
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 9.2e-48 193.7 172 66.9
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 2.7e-47 192.2 131 77.1
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 2.7e-47 192.2 142 72.5
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 3.5e-47 191.8 131 80.9
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 7.8e-47 190.7 130 78.5
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 1.3e-46 189.9 142 73.2
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 2.3e-46 189.1 141 73.8
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 2.3e-46 189.1 135 77.8
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 3.0e-46 188.7 142 75.4
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 3.9e-46 188.3 142 71.8
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.6e-46 187.2 140 72.9
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 1.1e-45 186.8 132 77.3
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 1.5e-45 186.4 132 76.5
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 1.5e-45 186.4 143 74.8
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.9e-45 186.0 143 75.5
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 2.5e-45 185.7 176 63.1
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.3e-45 185.3 128 79.7
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.3e-45 185.3 128 79.7
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 3.3e-45 185.3 128 79.7
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 4.3e-45 184.9 142 70.4
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 9.6e-45 183.7 133 78.9
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 1.2e-44 183.3 125 79.2
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 1.2e-44 183.3 142 73.2
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.2e-44 183.3 144 73.6
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 2.1e-44 182.6 117 82.1
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 2.8e-44 182.2 131 73.3
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 3.6e-44 181.8 143 74.1
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 6.2e-44 181.0 133 68.4
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 1.1e-43 180.3 128 75.0
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 1.4e-43 179.9 134 71.6
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 1.8e-43 179.5 133 71.4
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 2.4e-43 179.1 130 75.4
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 3.1e-43 178.7 128 75.8
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 3.1e-43 178.7 128 76.6
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 3.1e-43 178.7 130 74.6
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 3.1e-43 178.7 190 58.9
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 4.0e-43 178.3 127 75.6
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 4.0e-43 178.3 147 67.3
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 4.0e-43 178.3 128 77.3
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 4.0e-43 178.3 123 74.8
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 5.2e-43 177.9 109 82.6
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 5.2e-43 177.9 109 82.6
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 5.2e-43 177.9 109 82.6
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 5.2e-43 177.9 109 82.6
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 5.2e-43 177.9 142 66.9
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 6.9e-43 177.6 136 73.5
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 8.9e-43 177.2 113 83.2
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 8.9e-43 177.2 116 80.2
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 8.9e-43 177.2 117 78.6
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 8.9e-43 177.2 138 74.6
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 1.2e-42 176.8 139 70.5
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.5e-42 176.4 128 75.8
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 1.5e-42 176.4 138 73.2
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 2.0e-42 176.0 115 79.1
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.0e-42 176.0 128 75.8
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 2.6e-42 175.6 138 73.9
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 4.4e-42 174.9 105 85.7
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 4.4e-42 174.9 142 66.9
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 4.4e-42 174.9 132 70.5
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 5.8e-42 174.5 134 71.6
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 5.8e-42 174.5 130 73.8
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 7.6e-42 174.1 125 74.4
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 7.6e-42 174.1 122 75.4
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 9.9e-42 173.7 135 73.3
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 9.9e-42 173.7 135 73.3
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 1.3e-41 173.3 105 83.8
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 1.3e-41 173.3 105 83.8
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 2.2e-41 172.6 105 82.9
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 2.2e-41 172.6 105 81.9
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 8.4e-41 170.6 104 84.6
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.1e-40 170.2 105 81.9
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 2.4e-40 169.1 139 66.9
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 3.2e-40 168.7 133 66.9
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 4.2e-40 168.3 110 76.4
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 5.4e-40 167.9 128 69.5
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 1.2e-39 166.8 138 66.7
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 7.8e-39 164.1 122 70.5
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.3e-38 163.3 125 68.8
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 3.0e-38 162.2 113 73.5
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 1.9e-37 159.5 134 64.9
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 4.0e-35 151.8 131 58.8
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 4.0e-35 151.8 131 58.8
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 9.0e-35 150.6 119 63.9
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 7.6e-34 147.5 119 63.9
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.1e-32 141.0 128 65.6
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 1.6e-31 139.8 101 68.3
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 4.6e-31 138.3 82 89.0
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 1.3e-30 136.7 91 81.3
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 6.7e-30 134.4 105 61.9
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 1.5e-29 133.3 85 84.7
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 1.6e-28 129.8 115 56.5
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 2.4e-27 125.9 75 82.7
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 2.4e-27 125.9 75 82.7
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 1.8e-19 99.8 85 68.2
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 3.4e-18 95.5 106 48.1
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 4.5e-18 95.1 52 88.5
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 2.9e-17 92.4 102 48.0


User provided reference genes

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