Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-289 998.8 513 100.0
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.1e-287 990.7 513 99.0
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 6.0e-286 986.9 513 98.8
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.6e-284 980.3 513 98.1
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.1e-282 976.1 513 97.3
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 7.1e-271 936.8 514 94.4
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.3e-243 846.3 512 83.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 2.8e-243 845.1 511 84.3
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.1e-242 841.6 511 84.0
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 4.5e-225 784.6 509 77.4
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.2e-217 760.0 518 76.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.5e-217 759.6 514 76.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 5.0e-216 754.6 508 73.6
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 4.7e-214 748.0 513 74.1
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 3.9e-213 745.0 513 73.1
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.1e-212 743.4 515 75.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.6e-212 742.3 510 72.0
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 2.6e-212 742.3 513 72.9
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 4.4e-212 741.5 524 73.1
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 7.4e-212 740.7 516 74.0
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.8e-211 738.8 522 73.6
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 4.8e-211 738.0 516 72.9
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.1e-210 736.9 528 70.3
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.1e-210 735.3 510 72.2
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 4.1e-210 734.9 507 73.0
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 5.3e-210 734.6 508 73.8
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 7.0e-210 734.2 510 72.0
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.0e-209 732.6 513 73.3
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 3.5e-209 731.9 510 72.7
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 5.9e-209 731.1 514 73.0
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.0e-208 730.3 510 71.6
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.2e-208 729.2 510 71.6
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 8.5e-208 727.2 525 70.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.5e-207 725.7 515 72.6
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 2.5e-207 725.7 510 73.1
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 4.7e-206 721.5 509 70.7
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 8.0e-206 720.7 508 71.7
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.3e-205 719.2 537 68.7
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 3.0e-205 718.8 508 71.5
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.5e-204 716.5 510 70.2
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 2.0e-204 716.1 508 71.5
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 9.7e-204 713.8 513 67.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.8e-202 709.5 509 70.7
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 7.0e-202 707.6 515 69.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.6e-201 705.7 566 64.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 4.5e-201 704.9 500 70.6
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 2.9e-200 702.2 510 70.4
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 5.0e-200 701.4 508 67.9
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 6.5e-200 701.0 511 67.1
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 6.5e-200 701.0 489 72.6
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.9e-199 699.5 508 67.7
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 8.0e-198 694.1 602 62.3
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 4.1e-194 681.8 522 67.8
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 5.9e-193 677.9 507 68.8
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.7e-192 676.4 507 67.7
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.1e-191 673.7 518 68.1
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.5e-191 672.5 521 64.1
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.6e-190 669.8 520 65.0
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.6e-190 669.8 516 65.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 6.1e-190 667.9 508 68.7
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 3.7e-187 658.7 512 66.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 9.8e-180 634.0 540 60.0
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 8.3e-179 630.9 519 61.8
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.1e-178 630.6 515 64.9
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 4.1e-178 628.6 502 63.1
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 5.4e-178 628.2 513 64.5
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 7.0e-178 627.9 539 60.3
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.2e-177 627.1 520 62.7
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.7e-177 625.9 398 78.6
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 5.9e-177 624.8 533 63.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.7e-176 623.2 530 63.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 5.0e-176 621.7 519 61.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.9e-175 619.8 522 63.4
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.6e-174 615.5 498 62.7
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 2.3e-173 612.8 468 68.4
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 4.0e-173 612.1 543 58.7
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 7.5e-172 607.8 567 58.9
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 2.9e-171 605.9 462 67.7
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.1e-170 604.0 529 61.2
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.2e-169 600.5 521 61.6
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.6e-169 600.1 521 61.4
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.6e-169 600.1 521 61.4
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.6e-169 600.1 521 61.4
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.7e-168 596.7 521 61.2
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.7e-168 596.7 557 59.1
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 6.0e-161 571.6 512 57.4
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.1e-157 559.3 411 66.9
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.2e-157 558.5 365 77.0
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 2.8e-150 536.2 507 54.6
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-147 526.9 278 97.5
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 3.8e-147 525.8 350 75.1
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 9.3e-130 468.0 380 63.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 2.3e-120 436.8 501 51.5
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 3.7e-118 429.5 236 93.6
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.1e-117 426.4 471 54.6
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.0e-112 411.4 534 44.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 1.8e-109 400.6 534 43.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.1e-103 381.3 512 40.2
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 9.7e-103 378.3 492 49.0
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.7e-99 367.5 253 71.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 4.1e-93 346.3 253 68.4
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.8e-86 323.6 557 35.4
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 2.9e-83 313.5 264 58.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.7e-78 297.7 210 71.9
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 5.4e-77 292.7 204 71.1
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.6e-76 291.2 462 41.1
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.8e-72 275.8 219 67.1
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.4e-64 251.5 260 46.2
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 3.4e-63 246.9 248 59.3
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 2.4e-61 240.7 243 56.4
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.0e-59 235.3 221 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.9e-59 233.4 230 48.7
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 6.4e-54 216.1 493 28.2
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 4.3e-50 203.4 182 56.0
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.8e-48 198.0 259 49.4
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.1e-41 174.5 444 30.4
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.7e-38 164.9 150 57.3
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 4.1e-37 160.2 181 51.4
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.1e-34 152.1 525 26.5
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 6.6e-27 126.3 83 73.5
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 2.4e-24 117.9 100 56.0
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.2e-23 115.5 174 37.9
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.6e-23 114.4 110 50.9
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 6.4e-22 109.8 126 50.8
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.9e-21 108.2 121 49.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.2e-20 105.5 102 54.9
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 5.1e-19 100.1 190 39.5
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.7e-14 85.1 53 64.2
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.6e-07 61.2 72 50.0
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 6.5e-06 56.6 82 39.0
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 6.5e-06 56.6 46 60.9


User provided reference genes

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