Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 8.1e-160 567.0 284 100.0
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.8e-48 196.1 104 87.5
FAN05G0870 Fragaria x ananassa HOM05D067380 ORTHO05D009181 1.6e-38 164.1 146 67.1
FAN05G3304 Fragaria x ananassa HOM05D067380 ORTHO05D009181 5.0e-32 142.5 99 79.8
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 6.7e-29 132.1 187 46.5
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 1.5e-28 131.0 185 47.0
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 3.3e-28 129.8 190 45.3
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.8e-27 126.7 187 44.9
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.8e-21 107.5 64 79.7
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 5.1e-21 105.9 56 89.3
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 5.1e-21 105.9 56 89.3
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 6.7e-21 105.5 75 70.7
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 1.1e-20 104.8 186 39.2
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 9.7e-20 101.7 155 40.0
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 9.7e-20 101.7 155 40.0
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 2.2e-19 100.5 189 37.6
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 8.2e-19 98.6 173 39.3
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 2.4e-18 97.1 190 35.8
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 3.1e-18 96.7 185 37.8
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 4.1e-18 96.3 56 80.4
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 5.3e-18 95.9 185 37.8
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 6.9e-18 95.5 186 35.5
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 1.2e-17 94.7 187 35.8
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.5e-17 94.4 186 36.6
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.5e-17 94.4 189 36.5
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.0e-17 94.0 186 36.6
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.6e-17 93.6 186 35.5
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 2.6e-17 93.6 189 36.5
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.5e-17 92.8 190 36.3
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 4.5e-17 92.8 188 36.2
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 1.0e-16 91.7 183 35.0
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.0e-16 91.7 186 35.5
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.0e-16 91.7 186 35.5
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 1.3e-16 91.3 185 36.8
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 1.7e-16 90.9 202 36.1
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 1.7e-16 90.9 202 36.1
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.7e-16 90.9 190 36.8
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.2e-16 90.5 189 35.4
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 5.0e-16 89.4 202 33.2
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 6.5e-16 89.0 189 34.4
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 1.1e-15 88.2 186 37.1
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 1.1e-15 88.2 193 34.7
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.1e-15 88.2 186 36.0
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 1.4e-15 87.8 191 33.5
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 1.4e-15 87.8 191 34.6
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 1.9e-15 87.4 191 37.7
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 1.9e-15 87.4 189 36.0
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 3.2e-15 86.7 189 35.4
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 7.2e-15 85.5 187 34.8
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 9.4e-15 85.1 190 36.8
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.2e-14 84.7 222 33.3
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 1.2e-14 84.7 187 35.3
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.6e-14 84.3 190 35.3
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 1.6e-14 84.3 187 35.3
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 2.1e-14 84.0 197 34.0
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 2.1e-14 84.0 195 34.4
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 2.1e-14 84.0 187 35.3
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 7.9e-14 82.0 196 32.7
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 7.9e-14 82.0 191 34.6
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 1.0e-13 81.6 196 34.2
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 1.4e-13 81.3 195 32.3
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 1.4e-13 81.3 92 47.8
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 3.0e-13 80.1 195 33.8
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 3.0e-13 80.1 192 33.9
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 3.0e-13 80.1 190 32.1
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 3.9e-13 79.7 193 34.2
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 6.7e-13 79.0 188 32.4
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 8.8e-13 78.6 91 47.3
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.1e-12 78.2 192 32.3
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 1.1e-12 78.2 192 32.3
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.1e-12 78.2 192 32.3
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 1.1e-12 78.2 189 33.3
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 1.1e-12 78.2 177 36.2
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 2.0e-12 77.4 189 32.3
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 2.0e-12 77.4 91 47.3
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 2.0e-12 77.4 187 32.6
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 2.0e-12 77.4 88 47.7
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 2.0e-12 77.4 88 47.7
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 4.4e-12 76.3 182 33.5
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 4.4e-12 76.3 200 31.5
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 7.4e-12 75.5 192 31.8
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 7.4e-12 75.5 187 33.2
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 7.4e-12 75.5 188 30.9
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 9.7e-12 75.1 190 31.6
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 9.7e-12 75.1 197 32.0
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 9.7e-12 75.1 188 33.0
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 1.3e-11 74.7 188 33.0
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 2.8e-11 73.6 177 31.1
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 3.7e-11 73.2 93 45.2
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 3.7e-11 73.2 170 32.4
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 4.8e-11 72.8 187 31.6
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 8.2e-11 72.0 198 29.8
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 1.1e-10 71.6 179 30.7
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.4e-10 71.2 189 31.2
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 2.4e-10 70.5 170 33.5
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 2.4e-10 70.5 198 31.8
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 2.4e-10 70.5 195 28.7
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 4.1e-10 69.7 197 29.9
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 4.1e-10 69.7 101 48.5
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 7.0e-10 68.9 188 30.9
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 7.0e-10 68.9 93 41.9
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 7.7e-09 65.5 172 32.6
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 2.9e-08 63.5 50 58.0
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 6.5e-08 62.4 53 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.5e-07 61.2 58 51.7
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 9.4e-07 58.5 116 35.3
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 9.4e-07 58.5 116 37.9
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.2e-06 58.2 52 57.7
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 1.2e-06 58.2 132 36.4
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 2.1e-06 57.4 98 40.8
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 2.7e-06 57.0 112 40.2
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 2.7e-06 57.0 90 35.6
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 4.7e-06 56.2 51 49.0
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 6.1e-06 55.8 100 38.0


User provided reference genes

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