Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1012 Fragaria x ananassa HOM05D000829 ORTHO05D000690 2.0e-83 312.4 160 100.0
FvH4_5g19780 Fragaria vesca HOM05D000829 ORTHO05D000690 5.0e-74 281.2 148 96.6
FAN18G2735 Fragaria x ananassa HOM05D000829 ORTHO05D000690 5.0e-74 281.2 148 96.6
FAN08G0742 Fragaria x ananassa HOM05D000829 ORTHO05D000690 1.1e-73 280.0 148 95.9
RcHm_v2.0_Chr7g0204561 Rosa chinensis HOM05D000829 ORTHO05D000690 3.4e-70 268.5 147 91.8
FAN04G1769 Fragaria x ananassa HOM05D000829 ORTHO05D000690 2.2e-69 265.8 147 92.5
Prupe.5G062300 Prunus persica HOM05D000829 ORTHO05D000690 1.3e-45 186.8 146 68.5
MD04G1058500 Malus domestica HOM05D000829 ORTHO05D000690 1.1e-44 183.7 148 69.6
QL12p010571 Quercus lobata HOM05D000829 ORTHO05D000690 5.8e-30 134.8 143 53.1
QL12p009863 Quercus lobata HOM05D000829 ORTHO05D000690 1.3e-29 133.7 143 53.1
CiPaw.12G049000 Carya illinoinensis HOM05D000829 ORTHO05D000690 3.2e-28 129.0 143 52.4
COL.COLO4_37085 Corchorus olitorius HOM05D000829 ORTHO05D000690 5.4e-28 128.3 141 54.6
Duzib205G0041 Durio zibethinus HOM05D000829 ORTHO05D000690 1.2e-27 127.1 143 52.4
Gohir.A08G167200 Gossypium hirsutum HOM05D000829 ORTHO05D000690 2.1e-27 126.3 143 53.1
Thecc.03G245900 Theobroma cacao HOM05D000829 ORTHO05D000690 6.0e-27 124.8 143 53.1
Gohir.D08G186000 Gossypium hirsutum HOM05D000829 ORTHO05D000690 1.8e-26 123.2 143 52.4
Gorai.004G195400 Gossypium raimondii HOM05D000829 ORTHO05D000690 1.8e-26 123.2 143 52.4
Dinv39182 Davidia involucrata HOM05D000829 ORTHO05D000690 5.1e-26 121.7 144 48.6
Potri.001G154300 Populus trichocarpa HOM05D000829 ORTHO05D000690 6.7e-26 121.3 144 49.3
CANSAT21G0159 Cannabis sativa HOM05D000829 ORTHO05D000690 4.3e-25 118.6 143 49.7
Actinidia20132 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.6e-24 116.7 144 47.2
Potri.003G080400 Populus trichocarpa HOM05D000829 ORTHO05D000690 3.1e-23 112.5 145 50.3
Actinidia02174 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.6e-22 109.4 143 46.9
Manes.02G042300 Manihot esculenta HOM05D000829 ORTHO05D000690 4.5e-22 108.6 144 46.5
Glyma.05G063100 Glycine max HOM05D000829 ORTHO05D000690 2.2e-21 106.3 144 47.2
Haze_07952 Corylus avellana HOM05D000829 ORTHO05D000690 2.9e-21 105.9 141 46.8
Atru.chr9.1251 Acer truncatum HOM05D000829 ORTHO05D000690 4.9e-21 105.1 143 45.5
TAR636G3471 Trochodendron aralioides HOM05D000829 ORTHO05D000690 4.9e-21 105.1 144 48.6
Phvul.003G223562 Phaseolus vulgaris HOM05D000829 ORTHO05D000690 6.4e-21 104.8 144 44.4
Sabra01G0123900 Salix brachista HOM05D000829 ORTHO05D000690 8.4e-21 104.4 139 46.0
Sabra03G0051500 Salix brachista HOM05D000829 ORTHO05D000690 1.4e-20 103.6 180 41.1
Dinv21675 Davidia involucrata HOM05D000829 ORTHO05D000690 5.5e-20 101.7 145 44.8
Ciclev10020735m.g Citrus clementina HOM05D000829 ORTHO05D000690 9.3e-20 100.9 146 43.2
Sabra03G0050500 Salix brachista HOM05D000829 ORTHO05D000690 1.2e-19 100.5 180 40.6
VMungo0251G2442 Vigna mungo HOM05D000829 ORTHO05D000690 2.1e-19 99.8 143 45.5
arahy.Tifrunner.gnm1.ann1.MDY3TZ Arachis hypogaea HOM05D000829 ORTHO05D000690 7.9e-19 97.8 145 42.8
Lalb_Chr09g0329911 Lupinus albus HOM05D000829 ORTHO05D000690 7.9e-19 97.8 144 44.4
CSS0000911 Camellia sinensis var. sinensis HOM05D000829 ORTHO05D000690 1.0e-18 97.4 106 53.8
Ca_21996_v3 Cicer arietinum L. HOM05D000829 ORTHO05D000690 1.3e-18 97.1 144 46.5
Glyma.11G036300 Glycine max HOM05D000829 ORTHO05D000690 1.3e-18 97.1 144 43.8
arahy.Tifrunner.gnm1.ann1.6QWV70 Arachis hypogaea HOM05D000829 ORTHO05D000690 1.8e-18 96.7 158 40.5
Glyma.17G145100 Glycine max HOM05D000829 ORTHO05D000690 2.3e-18 96.3 143 44.8
Nn1g00870 Nelumbo nucifera HOM05D000829 ORTHO05D000690 1.1e-17 94.0 143 42.7
TPR.G37662 Trifolium pratense HOM05D000829 ORTHO05D000690 1.5e-17 93.6 143 44.8
Eucgr.D02109 Eucalyptus grandis HOM05D000829 ORTHO05D000690 2.5e-17 92.8 144 39.6
CsaV3_3G002480 Cucumis sativus L. HOM05D000829 ORTHO05D000690 9.6e-17 90.9 146 42.5
Lj8A271T27 Lonicera japonica HOM05D000829 ORTHO05D000690 1.3e-16 90.5 79 58.2
Nitab4.5_0000185g0120 Nicotiana tabacum HOM05D000829 ORTHO05D000690 1.3e-16 90.5 145 42.8
DCAR_008520 Daucus carota HOM05D000829 ORTHO05D000690 4.8e-16 88.6 135 43.0
ClCG10G002460 Citrullus lanatus HOM05D000829 ORTHO05D000690 6.2e-16 88.2 146 40.4
Lj2g0021277 Lotus japonicus HOM05D000829 ORTHO05D000690 8.2e-16 87.8 143 41.3
Nitab4.5_0002601g0090 Nicotiana tabacum HOM05D000829 ORTHO05D000690 8.2e-16 87.8 144 39.6
MELO3C013918.2 Cucumis melo HOM05D000829 ORTHO05D000690 1.8e-15 86.7 91 50.5
Nitab4.5_0000734g0090 Nicotiana tabacum HOM05D000829 ORTHO05D000690 1.8e-15 86.7 144 38.9
PGSC0003DMG400026233 Solanum tuberosum HOM05D000829 ORTHO05D000690 2.4e-15 86.3 144 40.3
Eucgr.E00379 Eucalyptus grandis HOM05D000829 ORTHO05D000690 3.1e-15 85.9 145 38.6
Cpa.g.sc89.44 Carica papaya HOM05D000829 ORTHO05D000690 4.0e-15 85.5 136 41.9
Lsat_1_v5_gn_3_1680 Lactuca sativa HOM05D000829 ORTHO05D000690 4.0e-15 85.5 143 38.5
VMungo1215G1444 Vigna mungo HOM05D000829 ORTHO05D000690 4.0e-15 85.5 146 42.5
TWI75G1190 Tripterygium wilfordii HOM05D000829 ORTHO05D000690 5.3e-15 85.1 151 38.4
Sopen08g003210 Solanum pennellii HOM05D000829 ORTHO05D000690 6.9e-15 84.7 147 41.5
Solyc08g078210.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 1.2e-14 84.0 144 38.9
Hma1.2p1_0821F.1_g224240 Hydrangea macrophylla HOM05D000829 ORTHO05D000690 1.5e-14 83.6 150 40.0
Medtr4g100480 Medicago truncatula HOM05D000829 ORTHO05D000690 1.5e-14 83.6 143 42.7
Nitab4.5_0003152g0170 Nicotiana tabacum HOM05D000829 ORTHO05D000690 1.5e-14 83.6 144 42.4
CAN.G1312.7 Capsicum annuum HOM05D000829 ORTHO05D000690 2.0e-14 83.2 144 38.2
CAN.G845.15 Capsicum annuum HOM05D000829 ORTHO05D000690 2.0e-14 83.2 123 41.5
Sopen08g026710 Solanum pennellii HOM05D000829 ORTHO05D000690 2.0e-14 83.2 144 38.9
Solyc08g007240.4 Solanum lycopersicum HOM05D000829 ORTHO05D000690 3.4e-14 82.4 146 41.8
Peaxi162Scf00102g00932 Petunia axillaris HOM05D000829 ORTHO05D000690 4.5e-14 82.0 144 41.7
PSO782G0827 Papaver somniferum HOM05D000829 ORTHO05D000690 7.6e-14 81.3 146 43.8
HanXRQChr06g0164521 Helianthus annuus HOM05D000829 ORTHO05D000690 1.0e-13 80.9 145 39.3
Oeu006823.1 Olea europaea HOM05D000829 ORTHO05D000690 1.0e-13 80.9 144 37.5
PGSC0003DMG401002270 Solanum tuberosum HOM05D000829 ORTHO05D000690 1.0e-13 80.9 124 41.1
Aqoxy3G02750 Aquilegia oxysepala HOM05D000829 ORTHO05D000690 1.7e-13 80.1 145 41.4
PGSC0003DMG402002270 Solanum tuberosum HOM05D000829 ORTHO05D000690 3.8e-13 79.0 109 45.0
AL8G10790 Arabidopsis lyrata HOM05D000829 ORTHO05D000690 4.9e-13 78.6 137 39.4
MBI04_g07215_MAGBIO Magnolia biondii HOM05D000829 ORTHO05D000690 4.9e-13 78.6 147 38.8
Psat4g073640 Pisum sativum HOM05D000829 ORTHO05D000690 4.9e-13 78.6 143 40.6
Sp2g12040 Schrenkiella parvula HOM05D000829 ORTHO05D000690 6.5e-13 78.2 137 38.0
Glyma.01G206800 Glycine max HOM05D000829 ORTHO05D000690 8.4e-13 77.8 67 56.7
vmacro00020 Vaccinium macrocarpon HOM05D000829 ORTHO05D000690 1.4e-12 77.0 86 48.8
DCAR_005001 Daucus carota HOM05D000829 ORTHO05D000690 1.9e-12 76.6 144 38.2
Gohir.D03G166500 Gossypium hirsutum HOM05D000829 ORTHO05D000690 3.2e-12 75.9 140 37.9
Gorai.003G176100 Gossypium raimondii HOM05D000829 ORTHO05D000690 3.2e-12 75.9 140 37.9
Gohir.A03G006000 Gossypium hirsutum HOM05D000829 ORTHO05D000690 7.1e-12 74.7 140 37.1
Cc08_g11940 Coffea canephora HOM05D000829 ORTHO05D000690 9.3e-12 74.3 87 48.3
Lj4g0016103 Lotus japonicus HOM05D000829 ORTHO05D000690 1.6e-11 73.6 144 40.3
BolC7t43642H Brassica oleracea HOM05D000829 ORTHO05D000690 3.5e-11 72.4 138 37.7
MSTRG.12133 Avicennia marina HOM05D000829 ORTHO05D000690 4.6e-11 72.0 144 36.1
BcaC06g31403 Brassica carinata HOM05D000829 ORTHO05D000690 4.6e-11 72.0 135 37.0
AUR62007131 Chenopodium quinoa HOM05D000829 ORTHO05D000690 7.9e-11 71.2 88 46.6
DCAR_027753 Daucus carota HOM05D000829 ORTHO05D000690 1.0e-10 70.9 75 50.7
PGSC0003DMG400019082 Solanum tuberosum HOM05D000829 ORTHO05D000690 1.0e-10 70.9 58 58.6
THA.LOC104798360 Tarenaya hassleriana HOM05D000829 ORTHO05D000690 1.8e-10 70.1 140 36.4
Peaxi162Scf00346g00214 Petunia axillaris HOM05D000829 ORTHO05D000690 2.3e-10 69.7 146 34.9
Phvul.002G055900 Phaseolus vulgaris HOM05D000829 ORTHO05D000690 3.0e-10 69.3 143 36.4
BcaC06g34267 Brassica carinata HOM05D000829 ORTHO05D000690 3.9e-10 68.9 135 36.3
Sc22g0001050 Simmondsia chinensis HOM05D000829 ORTHO05D000690 6.7e-10 68.2 59 54.2
A06p45160 Brassica napus HOM05D000829 ORTHO05D000690 8.7e-10 67.8 135 35.6
C07p30980 Brassica napus HOM05D000829 ORTHO05D000690 8.7e-10 67.8 135 34.8
BraA06t27386Z Brassica rapa HOM05D000829 ORTHO05D000690 8.7e-10 67.8 135 35.6
SalBow6G5750 Salvia bowleyana HOM05D000829 ORTHO05D000690 8.7e-10 67.8 144 36.1
AT5G47240 Arabidopsis thaliana HOM05D000829 ORTHO05D000690 1.9e-09 66.6 138 39.1
EL10Ac5g12318 Beta vulgaris HOM05D000829 ORTHO05D000690 1.9e-09 66.6 88 43.2
Thhalv10000934m.g Eutrema salsugineum HOM05D000829 ORTHO05D000690 2.5e-09 66.2 137 33.6
AUR62018881 Chenopodium quinoa HOM05D000829 ORTHO05D000690 3.3e-09 65.9 88 43.2
Hma1.2p1_2591F.1_g325020 Hydrangea macrophylla HOM05D000829 ORTHO05D000690 3.3e-09 65.9 41 70.7
Migut.A01157 Erythranthe guttata HOM05D000829 ORTHO05D000690 7.4e-09 64.7 65 50.8
PGR031G1518 Punica granatum HOM05D000829 ORTHO05D000690 7.4e-09 64.7 154 36.4
CARHR174120 Cardamine hirsuta HOM05D000829 ORTHO05D000690 9.7e-09 64.3 136 33.8
Aa31sc173G30 Aethionema arabicum HOM05D000829 ORTHO05D000690 2.2e-08 63.2 137 33.6
Carub.0008s0050 Capsella rubella HOM05D000829 ORTHO05D000690 2.2e-08 63.2 138 35.5
CDE02G1471 Ceratophyllum demersum HOM05D000829 ORTHO05D000690 2.8e-08 62.8 59 52.5
ATR0057G064 Amborella trichopoda HOM05D000829 ORTHO05D000690 4.8e-08 62.0 146 33.6
Dinv36709 Davidia involucrata HOM05D000829 ORTHO05D000690 6.3e-08 61.6 93 38.7
PSO832G4195 Papaver somniferum HOM05D000829 ORTHO05D000690 6.3e-08 61.6 39 64.1
PSO063G7526 Papaver somniferum HOM05D000829 ORTHO05D000690 1.1e-07 60.8 39 64.1
HanXRQChr17g0549261 Helianthus annuus HOM05D000829 ORTHO05D000690 1.4e-07 60.5 76 44.7
Nitab4.5_0006415g0040 Nicotiana tabacum HOM05D000829 ORTHO05D000690 2.4e-07 59.7 86 41.9
HanXRQChr14g0445091 Helianthus annuus HOM05D000829 ORTHO05D000690 3.1e-07 59.3 76 43.4
TAR629G3097 Trochodendron aralioides HOM05D000829 ORTHO05D000690 4.1e-07 58.9 38 65.8
Ah.12g054430 Amaranthus hybridus HOM05D000829 ORTHO05D000690 5.3e-07 58.5 40 62.5
Nn8g39019 Nelumbo nucifera HOM05D000829 ORTHO05D000690 9.0e-07 57.8 92 35.9
HPP92_020922 Vanilla planifolia HOM05D000829 ORTHO05D000690 9.0e-07 57.8 120 36.7
CDE11G0842 Ceratophyllum demersum HOM05D000829 ORTHO05D000690 1.2e-06 57.4 144 33.3
TAR626G0809 Trochodendron aralioides HOM05D000829 ORTHO05D000690 1.2e-06 57.4 41 56.1
Ciclev10010661m.g Citrus clementina HOM05D000829 ORTHO05D000690 1.5e-06 57.0 94 35.1
TAR626G1873 Trochodendron aralioides HOM05D000829 ORTHO05D000690 2.0e-06 56.6 94 34.0
Cfa003152 Carpinus fangiana HOM05D000829 ORTHO05D000690 2.6e-06 56.2 41 56.1
CSS0028510 Camellia sinensis var. sinensis HOM05D000829 ORTHO05D000690 3.4e-06 55.8 69 42.0
Duzib150G0842 Durio zibethinus HOM05D000829 ORTHO05D000690 4.5e-06 55.5 42 54.8
DCAR_024708 Daucus carota HOM05D000829 ORTHO05D000690 7.7e-06 54.7 56 46.4
FAN26G2703 Fragaria x ananassa HOM05D000640 ORTHO05D000690 7.7e-06 54.7 39 56.4
Potri.018G069100 Populus trichocarpa HOM05D000829 ORTHO05D000690 1.0e-05 54.3 38 57.9


User provided reference genes

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