Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.1e-46 187.6 87 100.0
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.0e-44 183.0 85 98.8
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 2.1e-29 132.1 64 96.9
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.1e-29 132.1 64 96.9
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.1e-29 132.1 64 96.9
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.1e-29 132.1 64 96.9
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.1e-29 132.1 64 96.9
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 2.1e-29 132.1 64 96.9
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.0e-29 130.6 64 95.3
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.8e-29 130.2 64 95.3
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.8e-29 130.2 64 95.3
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.3e-28 129.4 64 95.3
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 8.6e-28 126.7 64 89.1
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 1.5e-27 125.9 64 90.6
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 2.5e-27 125.2 64 89.1
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 2.5e-27 125.2 87 67.8
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 2.5e-27 125.2 64 89.1
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 3.3e-27 124.8 64 89.1
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 7.3e-27 123.6 63 88.9
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 7.3e-27 123.6 86 70.9
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 9.5e-27 123.2 64 85.9
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 9.5e-27 123.2 64 85.9
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 9.5e-27 123.2 64 85.9
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 9.5e-27 123.2 64 87.5
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 1.2e-26 122.9 64 84.4
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 1.2e-26 122.9 86 69.8
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 1.6e-26 122.5 63 87.3
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 1.6e-26 122.5 64 87.5
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 2.1e-26 122.1 64 84.4
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.1e-26 122.1 64 87.5
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 2.1e-26 122.1 64 87.5
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 2.1e-26 122.1 64 87.5
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 2.1e-26 122.1 64 85.9
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 2.8e-26 121.7 64 87.5
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 2.8e-26 121.7 64 87.5
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.8e-26 121.7 64 85.9
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 2.8e-26 121.7 63 87.3
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 2.8e-26 121.7 64 85.9
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 3.6e-26 121.3 66 86.4
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 3.6e-26 121.3 66 86.4
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 3.6e-26 121.3 66 86.4
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 3.6e-26 121.3 66 86.4
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 3.6e-26 121.3 66 86.4
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 4.7e-26 120.9 86 66.3
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 4.7e-26 120.9 69 81.2
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 4.7e-26 120.9 62 88.7
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 4.7e-26 120.9 64 85.9
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 4.7e-26 120.9 66 84.8
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 6.2e-26 120.6 64 85.9
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 6.2e-26 120.6 64 85.9
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 6.2e-26 120.6 64 85.9
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 6.2e-26 120.6 64 84.4
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 6.2e-26 120.6 66 86.4
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 8.1e-26 120.2 64 84.4
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 8.1e-26 120.2 64 85.9
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 8.1e-26 120.2 64 84.4
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 8.1e-26 120.2 64 85.9
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 8.1e-26 120.2 66 84.8
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 8.1e-26 120.2 64 84.4
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.1e-25 119.8 63 85.7
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 1.1e-25 119.8 64 84.4
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.1e-25 119.8 64 85.9
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.1e-25 119.8 64 84.4
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 1.1e-25 119.8 66 84.8
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 1.1e-25 119.8 66 84.8
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 1.4e-25 119.4 64 84.4
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 1.8e-25 119.0 64 82.8
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 1.8e-25 119.0 66 84.8
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 2.3e-25 118.6 64 84.4
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.3e-25 118.6 64 84.4
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 2.3e-25 118.6 64 82.8
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 3.1e-25 118.2 64 84.4
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 3.1e-25 118.2 64 84.4
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 3.1e-25 118.2 63 84.1
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.1e-25 118.2 64 82.8
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 3.1e-25 118.2 64 82.8
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 3.1e-25 118.2 64 82.8
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 3.1e-25 118.2 66 83.3
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 3.1e-25 118.2 66 84.8
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 5.2e-25 117.5 86 65.1
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 8.9e-25 116.7 62 87.1
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 8.9e-25 116.7 62 85.5
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 8.9e-25 116.7 64 81.2
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 8.9e-25 116.7 61 91.8
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 8.9e-25 116.7 87 63.2
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 8.9e-25 116.7 87 63.2
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.2e-24 116.3 63 82.5
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 1.5e-24 115.9 87 63.2
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 2.0e-24 115.5 62 83.9
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.0e-24 115.5 64 82.8
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 2.0e-24 115.5 62 83.9
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 2.0e-24 115.5 64 81.2
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 2.0e-24 115.5 64 82.8
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.6e-24 115.2 64 81.2
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.6e-24 115.2 64 81.2
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.6e-24 115.2 64 81.2
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 2.6e-24 115.2 66 81.8
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 3.4e-24 114.8 62 83.9
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 3.4e-24 114.8 62 83.9
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 3.4e-24 114.8 62 83.9
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 3.4e-24 114.8 62 83.9
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 3.4e-24 114.8 62 83.9
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 3.4e-24 114.8 62 83.9
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 4.4e-24 114.4 64 81.2
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 4.4e-24 114.4 65 80.0
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 4.4e-24 114.4 87 62.1
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 4.4e-24 114.4 62 83.9
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 4.4e-24 114.4 87 66.7
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 4.9e-23 110.9 57 89.5
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 6.4e-23 110.5 62 82.3
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 6.4e-23 110.5 62 82.3
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 8.3e-23 110.2 62 82.3
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.1e-22 109.8 63 79.4
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 2.4e-22 108.6 62 80.6
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 2.4e-22 108.6 62 80.6
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 2.4e-22 108.6 62 80.6
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 2.4e-22 108.6 62 80.6
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.2e-22 108.2 63 77.8
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 4.1e-22 107.8 62 80.6
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 9.2e-22 106.7 62 80.6
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 3.5e-21 104.8 87 60.9
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 6.0e-21 104.0 87 57.5
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 7.8e-21 103.6 62 79.0
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 7.8e-21 103.6 62 79.0
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 7.3e-19 97.1 62 74.2
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.5e-16 89.4 64 65.6
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 6.4e-15 84.0 82 54.9
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 9.2e-14 80.1 43 83.7
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-13 79.7 41 85.4
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-13 79.7 41 85.4
Atru.chr7.305 Acer truncatum HOM05D003336 ORTHO05D003807 3.0e-12 75.1 62 62.9
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.9e-11 72.4 87 47.1
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.6e-10 69.3 47 66.0
Atru.chr7.309 Acer truncatum HOM05D003336 ORTHO05D003807 2.8e-10 68.6 58 62.1
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.1e-09 66.6 42 71.4
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.4e-09 65.5 48 62.5
C03p84370 Brassica napus HOM05D000924 ORTHO05D001209 1.5e-08 62.8 36 72.2
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.8e-08 60.8 64 51.6
A08p15930 Brassica napus HOM05D000924 ORTHO05D001209 4.2e-06 54.7 27 85.2


User provided reference genes

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