Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.6e-203 711.8 367 100.0
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 1.4e-183 646.4 372 91.9
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 6.8e-183 644.0 372 91.7
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 3.4e-182 641.7 372 91.4
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.2e-179 633.3 372 89.8
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 7.3e-161 570.9 352 84.1
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 8.7e-138 494.2 371 70.1
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 1.3e-128 463.8 371 65.0
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 1.2e-107 394.0 335 61.5
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 6.9e-103 378.3 376 57.7
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 1.5e-102 377.1 374 56.1
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 2.9e-101 372.9 368 57.3
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 1.6e-99 367.1 320 60.6
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 2.1e-99 366.7 330 58.8
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 4.8e-96 355.5 363 54.8
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 6.3e-96 355.1 372 53.5
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 8.2e-96 354.8 370 54.6
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 8.2e-96 354.8 372 54.8
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 2.4e-95 353.2 363 58.7
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 6.9e-95 351.7 368 53.0
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 1.5e-94 350.5 368 53.5
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 1.0e-93 347.8 380 52.9
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 2.5e-92 343.2 367 53.4
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 3.2e-92 342.8 341 54.8
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 7.2e-92 341.7 373 50.9
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 9.4e-92 341.3 377 51.7
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 9.4e-92 341.3 341 54.5
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 7.9e-91 338.2 341 54.0
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 8.2e-88 328.2 363 49.3
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 1.8e-87 327.0 368 51.6
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 1.2e-86 324.3 371 50.1
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 5.9e-86 322.0 367 48.8
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 1.3e-85 320.9 374 51.9
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 1.3e-85 320.9 374 50.3
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 2.2e-85 320.1 373 50.7
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 2.9e-85 319.7 366 48.9
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 3.8e-85 319.3 370 48.6
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 1.6e-83 313.9 346 52.6
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 2.1e-83 313.5 374 49.7
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 2.7e-83 313.2 373 49.6
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 1.0e-82 311.2 372 50.3
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 5.7e-81 305.4 363 47.7
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 2.2e-80 303.5 358 50.6
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 2.8e-80 303.1 363 47.1
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 3.7e-80 302.8 373 49.3
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 4.8e-80 302.4 377 46.7
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 6.3e-80 302.0 370 48.6
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 1.0e-77 294.7 363 46.3
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 2.2e-77 293.5 265 59.6
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 1.5e-73 280.8 353 47.6
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 1.5e-73 280.8 273 56.8
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 5.7e-73 278.9 353 47.6
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 2.2e-72 276.9 266 59.8
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 2.8e-72 276.6 325 49.5
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 2.8e-72 276.6 370 45.4
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 2.8e-72 276.6 344 48.0
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 3.7e-72 276.2 266 59.8
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 7.0e-71 271.9 374 44.1
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 1.2e-70 271.2 353 46.2
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 1.6e-70 270.8 325 50.8
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 1.7e-69 267.3 366 44.0
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 1.8e-66 257.3 349 47.3
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 1.8e-66 257.3 363 43.3
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 4.0e-66 256.1 341 44.0
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 2.0e-65 253.8 325 46.2
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 3.4e-65 253.1 331 46.5
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 4.9e-64 249.2 318 49.7
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 8.3e-64 248.4 318 48.7
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.2e-62 244.6 331 46.2
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 3.5e-62 243.0 275 51.6
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 2.9e-61 240.0 355 45.6
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 2.9e-61 240.0 331 43.5
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 2.8e-59 233.4 348 43.4
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 2.8e-59 233.4 348 43.4
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 2.3e-58 230.3 376 41.8
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 1.5e-57 227.6 281 49.1
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.4e-55 221.1 254 50.4
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 2.4e-55 220.3 212 58.5
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 1.3e-53 214.5 370 41.1
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 8.9e-50 201.8 217 52.1
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 2.2e-48 197.2 380 36.3
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 3.7e-48 196.4 232 49.1
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 9.2e-47 191.8 271 41.7
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 7.8e-46 188.7 301 41.2
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 1.8e-42 177.6 376 33.8
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 2.6e-41 173.7 347 34.6
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 3.4e-41 173.3 370 33.8
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 9.9e-41 171.8 377 32.1
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 1.4e-39 167.9 150 62.0
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 1.2e-38 164.9 360 33.9
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 2.3e-37 160.6 367 33.5
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.5e-36 157.1 343 34.1
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 9.5e-36 155.2 358 32.7
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 9.5e-36 155.2 343 33.8
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 2.8e-35 153.7 354 31.1
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 2.8e-35 153.7 362 33.1
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 2.8e-35 153.7 362 33.1
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 6.2e-35 152.5 368 32.1
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 4.0e-34 149.8 362 32.3
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 1.2e-33 148.3 362 32.3
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 2.4e-31 140.6 138 53.6
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 3.9e-29 133.3 315 32.4
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 5.1e-29 132.9 130 51.5
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 4.3e-28 129.8 244 38.1
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 1.6e-27 127.9 298 31.2
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 9.3e-23 112.1 303 30.0
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 1.2e-22 111.7 350 30.3
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.1e-20 105.1 337 31.2
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 2.5e-20 104.0 294 29.9
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 4.3e-20 103.2 276 30.8
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 2.8e-19 100.5 363 27.0
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 1.4e-18 98.2 302 31.1
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.2e-14 85.1 126 43.7
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.2e-14 85.1 126 43.7
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 5.1e-13 79.7 80 51.2
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 5.6e-12 76.3 72 55.6
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.9e-07 61.2 126 34.1


User provided reference genes

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