Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.6e-49 196.8 98 100.0
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.3e-29 132.1 64 98.4
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.4e-26 122.9 64 90.6
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 4.1e-26 121.3 64 85.9
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 5.3e-26 120.9 64 87.5
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 7.0e-26 120.6 64 82.8
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 9.1e-26 120.2 63 87.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 2.0e-25 119.0 64 85.9
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.6e-25 118.6 65 83.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 3.5e-25 118.2 60 93.3
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 3.5e-25 118.2 66 81.8
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 4.5e-25 117.9 65 83.1
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.0e-24 116.7 64 82.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.0e-24 116.7 64 82.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.0e-24 116.7 64 85.9
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.3e-24 116.3 64 81.2
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.3e-24 116.3 64 81.2
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-24 116.3 64 81.2
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.3e-24 116.3 63 84.1
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.3e-24 116.3 64 81.2
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.7e-24 115.9 64 81.2
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.7e-24 115.9 65 83.1
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.7e-24 115.9 65 83.1
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.7e-24 115.9 65 83.1
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.9e-24 115.2 64 82.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.9e-24 115.2 64 81.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 2.9e-24 115.2 63 84.1
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 2.9e-24 115.2 64 79.7
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.9e-24 115.2 65 81.5
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 3.8e-24 114.8 64 82.8
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 3.8e-24 114.8 65 81.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.0e-24 114.4 64 79.7
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 5.0e-24 114.4 64 82.8
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 6.5e-24 114.0 64 79.7
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.1e-23 113.2 66 81.8
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-23 113.2 64 81.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.5e-23 112.8 64 76.6
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.9e-23 112.5 65 80.0
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.9e-23 112.5 65 80.0
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.9e-23 112.5 66 81.8
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.9e-23 112.5 66 78.8
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.5e-23 112.1 65 80.0
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.5e-23 112.1 65 80.0
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.5e-23 112.1 64 82.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 3.2e-23 111.7 66 78.8
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.2e-23 111.7 63 84.1
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.2e-23 111.7 63 84.1
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 3.2e-23 111.7 63 84.1
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.2e-23 111.3 64 78.1
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 4.2e-23 111.3 64 76.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 5.5e-23 110.9 63 81.0
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 5.5e-23 110.9 63 82.5
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 5.5e-23 110.9 66 78.8
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 5.5e-23 110.9 64 81.2
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 7.2e-23 110.5 64 79.7
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 7.2e-23 110.5 63 79.4
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 9.4e-23 110.2 66 80.3
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 9.4e-23 110.2 60 83.3
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 9.4e-23 110.2 66 78.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 9.4e-23 110.2 66 78.8
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 9.4e-23 110.2 65 78.5
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 9.4e-23 110.2 63 79.4
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.2e-22 109.8 59 84.7
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.2e-22 109.8 65 78.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.2e-22 109.8 65 78.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.2e-22 109.8 65 78.5
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.2e-22 109.8 65 78.5
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.2e-22 109.8 65 78.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.2e-22 109.8 65 78.5
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.6e-22 109.4 62 79.0
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.6e-22 109.4 65 76.9
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.6e-22 109.4 64 79.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.1e-22 109.0 65 76.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.1e-22 109.0 65 81.5
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 2.1e-22 109.0 65 73.8
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 2.7e-22 108.6 63 76.2
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.6e-22 108.2 63 76.2
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.6e-22 108.2 63 76.2
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 3.6e-22 108.2 65 73.8
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.6e-22 108.2 63 77.8
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 3.6e-22 108.2 62 77.4
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 3.6e-22 108.2 64 76.6
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.7e-22 107.8 62 80.6
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.7e-22 107.8 64 76.6
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.7e-22 107.8 66 75.8
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 6.1e-22 107.5 65 81.5
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 6.1e-22 107.5 65 75.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 6.1e-22 107.5 59 81.4
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 6.1e-22 107.5 65 76.9
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 8.0e-22 107.1 64 79.7
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 8.0e-22 107.1 65 76.9
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 8.0e-22 107.1 63 79.4
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 8.0e-22 107.1 63 79.4
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 8.0e-22 107.1 63 79.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.0e-21 106.7 63 79.4
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.4e-21 106.3 65 75.4
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 1.4e-21 106.3 61 80.3
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.4e-21 106.3 64 75.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.3e-21 105.5 62 75.8
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.3e-21 105.5 59 81.4
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.0e-21 105.1 65 73.8
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 3.0e-21 105.1 71 69.0
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 4.0e-21 104.8 65 73.8
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 4.0e-21 104.8 65 73.8
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 4.0e-21 104.8 65 73.8
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 4.0e-21 104.8 65 73.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 4.0e-21 104.8 65 73.8
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 4.0e-21 104.8 64 73.4
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 5.2e-21 104.4 64 76.6
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.7e-21 104.0 59 79.7
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 8.8e-21 103.6 65 72.3
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.1e-20 103.2 65 72.3
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.1e-20 103.2 65 72.3
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.1e-20 103.2 65 72.3
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.1e-20 103.2 65 72.3
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.1e-20 103.2 61 78.7
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.1e-20 103.2 64 75.0
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.1e-20 103.2 63 73.0
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.5e-20 102.8 65 72.3
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.5e-20 102.8 65 72.3
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.5e-20 102.8 65 72.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.5e-20 102.8 63 73.0
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.5e-20 102.8 60 80.0
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.6e-20 102.1 63 73.0
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 4.4e-20 101.3 65 72.3
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 9.7e-20 100.1 65 69.2
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.2e-19 99.0 54 79.6
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 3.7e-19 98.2 56 82.1
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 8.2e-19 97.1 57 75.4
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 8.2e-19 97.1 63 68.3
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 5.3e-18 94.4 46 97.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.6e-17 92.8 61 67.2
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.7e-16 89.4 46 89.1
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.2e-15 85.1 52 78.8
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 5.5e-15 84.3 58 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 7.2e-15 84.0 61 60.7
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 9.4e-15 83.6 81 54.3
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 9.4e-15 83.6 57 61.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.6e-14 81.6 49 79.6
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.0e-13 80.1 46 80.4
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.0e-13 80.1 46 80.4
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.8e-13 79.3 45 82.2
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 2.6e-12 75.5 63 54.0
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 4.4e-12 74.7 72 54.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.3e-11 73.2 40 82.5
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.2e-11 72.4 63 60.3
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 4.8e-11 71.2 54 61.1
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 3.1e-10 68.6 48 62.5
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.6e-09 66.2 50 62.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.7e-09 65.5 42 78.6
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.0e-08 63.5 35 85.7
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.2e-08 62.4 44 70.5


User provided reference genes

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