Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.9e-69 264.6 128 100.0
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 3.6e-67 258.1 128 97.7
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 4.0e-58 228.0 128 86.7
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 5.7e-44 181.0 88 97.7
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-43 179.5 88 96.6
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.8e-43 177.9 88 96.6
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 7.7e-33 144.1 127 63.8
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.3e-32 143.3 127 62.2
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.9e-23 112.8 124 51.6
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.2e-22 110.2 114 52.6
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.0e-21 107.1 123 54.5
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.0e-21 107.1 128 51.6
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.1e-20 103.6 129 47.3
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.6e-20 102.4 130 49.2
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 5.7e-20 101.3 133 45.1
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.8e-19 99.0 116 50.9
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 9.1e-18 94.0 129 46.5
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.2e-17 93.6 115 51.3
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 2.0e-17 92.8 122 44.3
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.0e-17 92.8 121 43.8
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.7e-16 89.7 123 48.0
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.7e-16 89.7 131 45.0
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.7e-16 89.7 115 48.7
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.7e-16 89.7 116 47.4
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.5e-15 86.7 123 46.3
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.5e-15 85.9 116 50.9
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.5e-15 85.9 128 43.8
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 3.2e-15 85.5 116 47.4
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 3.2e-15 85.5 115 47.0
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 4.2e-15 85.1 84 53.6
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 4.2e-15 85.1 116 47.4
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 4.2e-15 85.1 133 42.9
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 9.4e-15 84.0 123 42.3
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.6e-14 83.2 116 49.1
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.1e-14 82.8 125 40.8
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.1e-14 82.8 122 45.9
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 2.7e-14 82.4 126 46.0
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.6e-14 82.0 128 40.6
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.6e-14 82.0 122 45.9
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 6.1e-14 81.3 127 42.5
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.8e-13 79.7 128 40.6
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 2.3e-13 79.3 119 42.0
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 4.0e-13 78.6 116 43.1
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 6.8e-13 77.8 119 42.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 6.8e-13 77.8 119 42.9
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.8e-13 77.4 124 41.1
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 1.2e-12 77.0 119 39.5
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.5e-12 76.6 118 41.5
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.5e-12 76.6 119 40.3
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.0e-12 76.3 128 39.1
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 3.4e-12 75.5 125 42.4
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 5.7e-12 74.7 121 43.0
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 7.5e-12 74.3 120 38.3
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-11 73.6 127 41.7
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.3e-11 73.6 120 38.3
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.7e-11 73.2 119 38.7
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.7e-11 73.2 127 41.7
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.7e-11 73.2 127 41.7
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 2.2e-11 72.8 129 40.3
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.2e-11 72.8 125 42.4
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 2.8e-11 72.4 123 43.1
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 3.7e-11 72.0 117 46.2
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 3.7e-11 72.0 125 43.2
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 6.3e-11 71.2 135 40.0
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 6.3e-11 71.2 122 41.0
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 6.3e-11 71.2 128 38.3
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 8.3e-11 70.9 115 40.9
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.4e-10 70.1 114 39.5
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.4e-10 69.3 123 42.3
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 2.4e-10 69.3 126 39.7
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 2.4e-10 69.3 124 39.5
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.1e-10 68.9 122 38.5
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 4.1e-10 68.6 118 39.0
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 7.0e-10 67.8 136 38.2
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 7.0e-10 67.8 124 41.9
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 9.1e-10 67.4 121 37.2
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 1.2e-09 67.0 117 45.3
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 2.7e-09 65.9 124 37.1
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 3.5e-09 65.5 123 39.8
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 3.5e-09 65.5 124 37.1
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 3.5e-09 65.5 125 40.0
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 4.5e-09 65.1 116 38.8
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 4.5e-09 65.1 122 36.9
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 5.9e-09 64.7 80 47.5
MSTRG.12158 Avicennia marina HOM05D006292 ORTHO05D006110 5.9e-09 64.7 117 38.5
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 5.9e-09 64.7 124 37.9
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 5.9e-09 64.7 122 36.9
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 7.7e-09 64.3 124 37.1
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 7.7e-09 64.3 124 37.9
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 7.7e-09 64.3 124 37.1
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 7.7e-09 64.3 124 37.9
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 7.7e-09 64.3 125 40.0
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.0e-08 63.9 125 40.0
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 1.3e-08 63.5 118 37.3
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 1.3e-08 63.5 123 39.0
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.3e-08 63.5 122 38.5
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 2.2e-08 62.8 118 36.4
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 2.2e-08 62.8 124 37.1
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.2e-08 62.8 123 38.2
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.2e-08 62.8 141 39.7
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 2.2e-08 62.8 127 36.2
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 2.2e-08 62.8 125 37.6
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 3.8e-08 62.0 120 35.0
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 3.8e-08 62.0 120 35.0
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 3.8e-08 62.0 123 39.0
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.8e-08 62.0 122 36.9
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 5.0e-08 61.6 122 36.9
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 5.0e-08 61.6 116 36.2
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 6.5e-08 61.2 122 34.4
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 8.5e-08 60.8 126 37.3
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 8.5e-08 60.8 125 39.2
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 8.5e-08 60.8 125 39.2
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 1.1e-07 60.5 125 39.2
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 1.1e-07 60.5 125 39.2
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 1.1e-07 60.5 125 39.2
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.1e-07 60.5 114 34.2
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.1e-07 60.5 123 38.2
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.9e-07 59.7 120 34.2
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.9e-07 59.7 120 34.2
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.9e-07 59.7 120 34.2
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 2.5e-07 59.3 128 39.1
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 3.2e-07 58.9 124 33.9
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 3.2e-07 58.9 115 40.0
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 7.2e-07 57.8 129 35.7
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 9.4e-07 57.4 129 34.1
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 1.2e-06 57.0 129 31.8
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 1.2e-06 57.0 85 41.2


User provided reference genes

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