Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0889 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.4e-47 192.6 94 100.0
FAN17G2329 Fragaria x ananassa HOM05D004346 ORTHO05D005153 6.9e-47 190.3 93 98.9
FAN09G3639 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.6e-46 188.3 93 96.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 4.2e-44 181.0 93 94.6
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 5.4e-44 180.6 93 93.5
FAN21G1121 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.8e-39 165.6 93 90.3
FvH4_2g39180 Fragaria vesca HOM05D004346 ORTHO05D005153 1.1e-36 156.4 80 93.8
Prupe.1G372600 Prunus persica HOM05D004346 ORTHO05D005153 1.1e-36 156.4 80 92.5
RcHm_v2.0_Chr6g0301881 Rosa chinensis HOM05D004346 ORTHO05D005153 1.1e-36 156.4 80 93.8
ClCG05G018660 Citrullus lanatus HOM05D004346 ORTHO05D005153 1.4e-36 156.0 80 92.5
MELO3C003788.2 Cucumis melo HOM05D004346 ORTHO05D005153 1.4e-36 156.0 80 92.5
CiPaw.07G155800 Carya illinoinensis HOM05D004346 ORTHO05D005153 1.9e-36 155.6 80 92.5
CANSAT25G3810 Cannabis sativa HOM05D004346 ORTHO05D005153 2.4e-36 155.2 80 92.5
MD15G1020800 Malus domestica HOM05D004346 ORTHO05D005153 2.4e-36 155.2 80 91.2
FAN15G2637 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.2e-36 154.8 80 92.5
FAN20G0669 Fragaria x ananassa HOM05D004346 ORTHO05D005153 5.4e-36 154.1 80 92.5
FAN27G0767 Fragaria x ananassa HOM05D004346 ORTHO05D005153 7.1e-36 153.7 80 92.5
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 7.1e-36 153.7 80 90.0
Atru.chr13.385 Acer truncatum HOM05D004346 ORTHO05D005153 9.3e-36 153.3 80 88.8
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 9.3e-36 153.3 80 91.2
Cfa013888 Carpinus fangiana HOM05D004346 ORTHO05D005153 9.3e-36 153.3 80 91.2
Haze_22565 Corylus avellana HOM05D004346 ORTHO05D005153 9.3e-36 153.3 80 91.2
MBI01_g12679_MAGBIO Magnolia biondii HOM05D004346 ORTHO05D005153 1.2e-35 152.9 90 82.2
MD08G1023400 Malus domestica HOM05D004346 ORTHO05D005153 1.2e-35 152.9 80 90.0
CsaV3_3G045520 Cucumis sativus L. HOM05D004346 ORTHO05D005153 1.6e-35 152.5 80 88.8
DCAR_009955 Daucus carota HOM05D004346 ORTHO05D005153 1.6e-35 152.5 86 81.4
Gohir.A05G189500 Gossypium hirsutum HOM05D004346 ORTHO05D005153 2.1e-35 152.1 85 84.7
Gohir.D05G192800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 2.1e-35 152.1 85 84.7
Gorai.009G198000 Gossypium raimondii HOM05D004346 ORTHO05D005153 2.1e-35 152.1 85 84.7
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 2.1e-35 152.1 86 82.6
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 3.5e-35 151.4 83 88.0
Thecc.08G035100 Theobroma cacao HOM05D004346 ORTHO05D005153 3.5e-35 151.4 80 88.8
Lj4C32T10 Lonicera japonica HOM05D004346 ORTHO05D005153 4.6e-35 151.0 80 87.5
TWI56G1281 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 4.6e-35 151.0 80 87.5
Duzib093G0381 Durio zibethinus HOM05D004346 ORTHO05D005153 6.0e-35 150.6 83 88.0
Glyma.14G070400 Glycine max HOM05D004346 ORTHO05D005153 7.9e-35 150.2 89 79.8
Lalb_Chr23g0266421 Lupinus albus HOM05D004346 ORTHO05D005153 7.9e-35 150.2 80 87.5
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 1.0e-34 149.8 80 87.5
COL.COLO4_26227 Corchorus olitorius HOM05D004346 ORTHO05D005153 1.0e-34 149.8 80 87.5
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 1.0e-34 149.8 80 87.5
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 1.0e-34 149.8 80 87.5
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 1.3e-34 149.4 80 85.0
Dinv31796 Davidia involucrata HOM05D004346 ORTHO05D005153 1.3e-34 149.4 80 87.5
Eucgr.F01853 Eucalyptus grandis HOM05D004346 ORTHO05D005153 1.3e-34 149.4 91 78.0
Sed0026579 Sechium edule HOM05D004346 ORTHO05D005153 1.3e-34 149.4 80 85.0
CiPaw.08G061400 Carya illinoinensis HOM05D004346 ORTHO05D005153 1.8e-34 149.1 80 87.5
Ciclev10002101m.g Citrus clementina HOM05D004346 ORTHO05D005153 1.8e-34 149.1 80 87.5
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea HOM05D004346 ORTHO05D005153 2.3e-34 148.7 80 86.2
PSO541G5233 Papaver somniferum HOM05D004346 ORTHO05D005153 2.3e-34 148.7 75 92.0
PSO675G8115 Papaver somniferum HOM05D004346 ORTHO05D005153 2.3e-34 148.7 75 92.0
SalBow8G0366 Salvia bowleyana HOM05D004346 ORTHO05D005153 2.3e-34 148.7 80 87.5
SalBow8G2486 Salvia bowleyana HOM05D004346 ORTHO05D005153 2.3e-34 148.7 80 87.5
VMungo1309G1438 Vigna mungo HOM05D004346 ORTHO05D005153 2.3e-34 148.7 80 86.2
Actinidia22506 Actinidia chinensis HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 87.5
Ca_02070_v3 Cicer arietinum L. HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 85.0
Glyma.04G028400 Glycine max HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 85.0
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 86.2
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 85.0
Phvul.001G010700 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 3.0e-34 148.3 87 78.2
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 85.0
Potri.005G232800 Populus trichocarpa HOM05D004346 ORTHO05D005153 3.0e-34 148.3 80 86.2
VMungo0647G1706 Vigna mungo HOM05D004346 ORTHO05D005153 3.0e-34 148.3 87 78.2
Aqoxy6G01229 Aquilegia oxysepala HOM05D004346 ORTHO05D005153 3.9e-34 147.9 85 82.4
Duzib116G0866 Durio zibethinus HOM05D004346 ORTHO05D005153 3.9e-34 147.9 83 84.3
Migut.N03118 Erythranthe guttata HOM05D004346 ORTHO05D005153 3.9e-34 147.9 80 85.0
ECA232G0130 Erigeron canadensis HOM05D004346 ORTHO05D005153 5.1e-34 147.5 80 83.8
Lj1g0013800 Lotus japonicus HOM05D004346 ORTHO05D005153 5.1e-34 147.5 80 85.0
QL02p010362 Quercus lobata HOM05D004346 ORTHO05D005153 5.1e-34 147.5 80 86.2
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 6.7e-34 147.1 80 85.0
MSTRG.24272 Avicennia marina HOM05D004346 ORTHO05D005153 8.7e-34 146.7 80 86.2
Eucgr.F01605 Eucalyptus grandis HOM05D004346 ORTHO05D005153 8.7e-34 146.7 75 89.3
Oeu030608.1 Olea europaea HOM05D004346 ORTHO05D005153 8.7e-34 146.7 80 83.8
Psat0s471g0440 Pisum sativum HOM05D004346 ORTHO05D005153 8.7e-34 146.7 88 79.5
unitig_22.g6787 Utricularia gibba HOM05D004346 ORTHO05D005153 8.7e-34 146.7 86 79.1
ATR0680G160 Amborella trichopoda HOM05D004346 ORTHO05D005153 1.1e-33 146.4 79 84.8
Medtr3g112420 Medicago truncatula HOM05D004346 ORTHO05D005153 1.5e-33 146.0 80 85.0
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 1.5e-33 146.0 80 83.8
Duzib041G0460 Durio zibethinus HOM05D004346 ORTHO05D005153 2.5e-33 145.2 80 83.8
Glyma.06G028500 Glycine max HOM05D004346 ORTHO05D005153 3.3e-33 144.8 80 85.0
Phvul.009G012900 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 3.3e-33 144.8 80 85.0
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 3.3e-33 144.8 82 86.6
TWI36G0841 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 4.3e-33 144.4 85 77.6
Aa31LG4G5700 Aethionema arabicum HOM05D004346 ORTHO05D005153 5.6e-33 144.1 81 85.2
CARHR068870 Cardamine hirsuta HOM05D004346 ORTHO05D005153 5.6e-33 144.1 88 77.3
THA.LOC104813810 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 5.6e-33 144.1 81 86.4
BcaB05g24908 Brassica carinata HOM05D004346 ORTHO05D005153 7.4e-33 143.7 84 83.3
A02p19950 Brassica napus HOM05D004346 ORTHO05D005153 7.4e-33 143.7 84 83.3
BraA02t07032Z Brassica rapa HOM05D004346 ORTHO05D005153 7.4e-33 143.7 84 83.3
C02p32610 Brassica napus HOM05D004346 ORTHO05D005153 9.6e-33 143.3 84 82.1
BolC2t09292H Brassica oleracea HOM05D004346 ORTHO05D005153 9.6e-33 143.3 84 82.1
AT1G75460 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 1.3e-32 142.9 90 76.7
Thhalv10019638m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.3e-32 142.9 81 84.0
Gorai.002G126100 Gossypium raimondii HOM05D004346 ORTHO05D005153 1.3e-32 142.9 78 83.3
THA.LOC104809066 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 1.3e-32 142.9 81 86.4
BcaC03g15576 Brassica carinata HOM05D004346 ORTHO05D005153 1.6e-32 142.5 84 82.1
Sc15g0007210 Simmondsia chinensis HOM05D004346 ORTHO05D005153 1.6e-32 142.5 84 78.6
TPR.G12390 Trifolium pratense HOM05D004346 ORTHO05D005153 1.6e-32 142.5 97 73.2
Sp5g30610 Schrenkiella parvula HOM05D004346 ORTHO05D005153 2.8e-32 141.7 76 89.5
AL2G35430 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 3.7e-32 141.4 90 75.6
Gohir.D06G002460 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.7e-32 141.4 88 75.0
Gohir.A06G006700 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.8e-32 141.0 88 75.0
Gorai.010G007200 Gossypium raimondii HOM05D004346 ORTHO05D005153 4.8e-32 141.0 88 75.0
Mapoly0123s0028 Marchantia polymorpha HOM05D004346 ORTHO05D005153 4.8e-32 141.0 78 84.6
Carub.0002s2234 Capsella rubella HOM05D004346 ORTHO05D005153 6.2e-32 140.6 90 74.4
Rhsim06G0027900 Rhododendron simsii HOM05D004346 ORTHO05D005153 8.1e-32 140.2 75 86.7
SMO340G0026 Selaginella moellendorffii HOM05D004346 ORTHO05D005153 2.4e-31 138.7 78 79.5
CARHR020270 Cardamine hirsuta HOM05D004346 ORTHO05D005153 2.0e-30 135.6 81 79.0
AL1G32470 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.6e-30 135.2 81 77.8
AT1G19740 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 2.6e-30 135.2 81 77.8
Carub.0001s1929 Capsella rubella HOM05D004346 ORTHO05D005153 2.6e-30 135.2 81 77.8
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 2.6e-30 135.2 90 70.0
A06p15850 Brassica napus HOM05D004346 ORTHO05D005153 5.8e-30 134.0 81 76.5
C05p18170 Brassica napus HOM05D004346 ORTHO05D005153 5.8e-30 134.0 81 76.5
BolC5t30525H Brassica oleracea HOM05D004346 ORTHO05D005153 5.8e-30 134.0 81 76.5
BraA06t24697Z Brassica rapa HOM05D004346 ORTHO05D005153 5.8e-30 134.0 81 76.5
AUR62034542 Chenopodium quinoa HOM05D004346 ORTHO05D005153 5.8e-30 134.0 82 78.0
Thhalv10008437m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 5.8e-30 134.0 81 76.5
Pp3c2_28030 Physcomitrium patens HOM05D004346 ORTHO05D005153 5.8e-30 134.0 78 76.9
Sp1g17580 Schrenkiella parvula HOM05D004346 ORTHO05D005153 5.8e-30 134.0 81 76.5
Ah.10g035530 Amaranthus hybridus HOM05D004346 ORTHO05D005153 7.6e-30 133.7 85 71.8
AL7G10400 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.3e-29 132.9 91 72.5
FAN06G3524 Fragaria x ananassa HOM05D001256 ORTHO05D005153 1.7e-29 132.5 68 95.6
SEGI_26379 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 1.7e-29 132.5 90 70.0
AagrBONN_evm.TU.Sc2ySwM_117.454 Anthoceros agrestis HOM05D004346 ORTHO05D005153 2.9e-29 131.7 79 73.4
HPP92_007934 Vanilla planifolia HOM05D004346 ORTHO05D005153 2.9e-29 131.7 80 77.5
Gohir.A01G113800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.8e-29 131.3 74 83.8
SGA_v2.0_scaffold326G48739 Striga asiatica HOM05D004346 ORTHO05D005153 1.2e-27 126.3 81 71.6
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 1.6e-27 125.9 81 71.6
Os07g0509700 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 3.0e-26 121.7 83 69.9
Zm00001eb105790 Zea mays HOM05D004346 ORTHO05D005153 2.5e-25 118.6 85 64.7
Zm00001eb322430 Zea mays HOM05D004346 ORTHO05D005153 4.3e-25 117.9 82 65.9
CBR_g51048 Chara braunii HOM05D004346 ORTHO05D005153 3.4e-22 108.2 96 57.3
BcaB07g31988 Brassica carinata HOM05D004346 ORTHO05D005153 1.2e-19 99.8 58 79.3
Nn1g05970 Nelumbo nucifera HOM05D004346 ORTHO05D005153 2.7e-19 98.6 50 88.0
Nitab4.5_0001861g0130 Nicotiana tabacum HOM05D004346 ORTHO05D005153 3.5e-19 98.2 49 89.8
Nitab4.5_0002156g0110 Nicotiana tabacum HOM05D004346 ORTHO05D005153 3.5e-19 98.2 49 89.8
CAN.G851.33 Capsicum annuum HOM05D004346 ORTHO05D005153 7.9e-19 97.1 49 87.8
unitig_21.g20157 Utricularia gibba HOM05D004346 ORTHO05D005153 3.0e-18 95.1 50 84.0
Oeu030408.1 Olea europaea HOM05D004346 ORTHO05D005153 3.9e-18 94.7 49 83.7
LjContig00412g0021689 Lotus japonicus HOM05D004346 ORTHO05D005153 8.7e-18 93.6 49 83.7
Lj3g0013855 Lotus japonicus HOM05D004346 ORTHO05D005153 1.5e-17 92.8 49 83.7
Gohir.D01G101600 Gossypium hirsutum HOM05D004346 ORTHO05D005153 2.5e-17 92.0 48 83.3
AL7G11380 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 8.2e-16 87.0 50 80.0
AL2G41610 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.4e-15 86.3 50 78.0
AL8G23230 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.4e-15 86.3 50 80.0
AL5G17660 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 5.3e-15 84.3 50 78.0
AL3G42160 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.2e-14 83.2 50 78.0
Os03g0409100 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 3.4e-14 81.6 80 55.0
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 5.9e-14 80.9 49 75.5
Actinidia15370 Actinidia chinensis HOM05D004346 ORTHO05D005153 1.1e-12 76.6 77 61.0
Zm00001eb019650 Zea mays HOM05D004346 ORTHO05D005153 1.9e-12 75.9 75 54.7
QL05p047111 Quercus lobata HOM05D001221 ORTHO05D002870 3.6e-11 71.6 43 76.7
CDE03G0026 Ceratophyllum demersum HOM05D004346 ORTHO05D005153 1.3e-08 63.2 28 96.4
Thhalv10027193m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.7e-08 62.8 35 74.3
Nn5g30640 Nelumbo nucifera HOM05D004346 ORTHO05D005153 1.8e-07 59.3 59 50.8
Thhalv10029286m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.5e-06 56.2 35 68.6
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 2.0e-06 55.8 82 37.8
ATR0730G006 Amborella trichopoda HOM05D000041 ORTHO05D006140 2.6e-06 55.5 91 36.3


User provided reference genes

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