Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.7e-28 128.6 67 100.0
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.7e-28 128.6 67 100.0
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 8.7e-28 126.3 67 97.0
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 8.7e-28 126.3 67 97.0
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.9e-27 125.2 67 95.5
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 4.0e-25 117.5 64 92.2
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 2.4e-17 91.7 60 76.7
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 3.8e-15 84.3 56 78.6
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.1e-14 82.8 67 65.7
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.1e-14 82.8 60 78.3
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 2.4e-14 81.6 63 66.7
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 5.5e-14 80.5 62 69.4
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 5.5e-14 80.5 55 74.5
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 7.1e-14 80.1 61 65.6
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.1e-13 78.6 61 62.3
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.7e-13 78.2 62 64.5
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 4.6e-13 77.4 59 66.1
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 4.6e-13 77.4 63 65.1
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 4.6e-13 77.4 59 64.4
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 6.0e-13 77.0 55 63.6
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 1.0e-12 76.3 67 65.7
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.3e-12 75.9 62 66.1
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 1.8e-12 75.5 64 60.9
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 2.3e-12 75.1 62 67.7
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 3.0e-12 74.7 66 56.1
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 3.9e-12 74.3 51 70.6
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 5.1e-12 73.9 62 62.9
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 5.1e-12 73.9 62 61.3
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 5.1e-12 73.9 61 59.0
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 5.1e-12 73.9 61 59.0
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 5.1e-12 73.9 62 61.3
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 6.7e-12 73.6 54 64.8
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 8.7e-12 73.2 66 54.5
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 1.1e-11 72.8 64 59.4
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.1e-11 72.8 54 64.8
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.1e-11 72.8 55 60.0
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.5e-11 72.4 62 59.7
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 1.9e-11 72.0 62 59.7
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 3.3e-11 71.2 54 63.0
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 3.3e-11 71.2 54 63.0
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 3.3e-11 71.2 54 63.0
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 3.3e-11 71.2 51 60.8
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 3.3e-11 71.2 62 66.1
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 4.3e-11 70.9 56 66.1
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 5.6e-11 70.5 61 59.0
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 5.6e-11 70.5 51 62.7
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.6e-11 70.5 62 62.9
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 5.6e-11 70.5 62 62.9
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 5.6e-11 70.5 59 67.8
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 7.4e-11 70.1 62 64.5
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 7.4e-11 70.1 51 64.7
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 9.6e-11 69.7 64 54.7
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 1.3e-10 69.3 64 56.2
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.3e-10 69.3 62 61.3
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.6e-10 68.9 46 69.6
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 2.1e-10 68.6 62 61.3
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 2.1e-10 68.6 62 58.1
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 3.7e-10 67.8 50 64.0
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 4.8e-10 67.4 59 54.2
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 4.8e-10 67.4 65 58.5
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 4.8e-10 67.4 51 60.8
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 4.8e-10 67.4 51 60.8
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 6.2e-10 67.0 64 57.8
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 6.2e-10 67.0 55 56.4
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 1.1e-09 66.2 62 54.8
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.4e-09 65.9 51 58.8
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 1.8e-09 65.5 65 52.3
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 1.8e-09 65.5 58 56.9
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 3.1e-09 64.7 64 51.6
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 4.0e-09 64.3 65 50.8
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 4.0e-09 64.3 65 50.8
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 5.3e-09 63.9 61 54.1
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 6.9e-09 63.5 54 57.4
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.2e-08 62.8 68 51.5
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.2e-08 62.8 61 54.1
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 2.0e-08 62.0 59 55.9
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 2.6e-08 61.6 55 60.0
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 2.9e-07 58.2 55 54.5
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 6.5e-07 57.0 64 48.4
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 8.4e-07 56.6 51 52.9
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.4e-06 55.8 63 46.0


User provided reference genes

Program Settings