Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.8e-100 368.6 184 100.0
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.2e-97 359.0 184 96.7
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.4e-96 356.3 182 97.8
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.9e-88 329.3 185 93.0
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.2e-88 328.6 186 91.4
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.8e-76 288.9 182 84.6
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.4e-64 250.0 186 72.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 5.1e-62 241.5 198 68.7
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.6e-60 236.5 191 69.6
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 2.1e-60 236.1 143 81.8
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 6.2e-60 234.6 170 74.1
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 1.1e-59 233.8 183 71.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 2.4e-59 232.6 148 78.4
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 2.0e-58 229.6 189 68.3
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.3e-57 226.9 191 67.5
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.3e-57 226.9 140 82.1
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.2e-57 226.1 191 67.0
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 2.2e-57 226.1 162 72.8
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 4.9e-57 224.9 191 66.5
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 6.4e-57 224.6 170 70.6
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 8.4e-57 224.2 181 67.4
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 3.2e-56 222.2 145 79.3
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.1e-55 219.5 196 62.2
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 3.5e-55 218.8 179 67.0
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.3e-54 216.1 188 61.2
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.3e-54 216.1 141 80.9
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 3.9e-54 215.3 175 69.7
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 3.9e-54 215.3 140 75.7
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 6.6e-54 214.5 136 79.4
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 6.6e-54 214.5 188 60.1
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 8.7e-54 214.2 149 71.1
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.5e-53 213.4 150 74.7
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 2.5e-53 212.6 198 62.1
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 4.3e-53 211.8 184 61.4
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 5.6e-53 211.5 178 65.2
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 7.3e-53 211.1 184 61.4
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 9.6e-53 210.7 166 68.1
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.3e-52 210.3 142 78.2
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.3e-52 210.3 184 60.9
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 1.6e-52 209.9 170 61.8
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 1.6e-52 209.9 170 61.8
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 1.6e-52 209.9 170 61.8
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.6e-52 209.9 141 73.0
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 3.6e-52 208.8 168 61.9
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 3.6e-52 208.8 168 61.9
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 3.6e-52 208.8 183 66.7
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.6e-52 208.8 186 59.1
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 4.8e-52 208.4 170 61.2
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.4e-51 206.8 164 64.0
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.8e-51 206.5 141 69.5
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 2.4e-51 206.1 150 69.3
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 4.0e-51 205.3 138 71.7
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.0e-51 205.3 203 57.1
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 2.0e-50 203.0 191 62.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.0e-50 203.0 133 74.4
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 2.6e-50 202.6 133 73.7
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 3.4e-50 202.2 153 64.7
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 7.6e-50 201.1 188 60.1
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 7.6e-50 201.1 147 70.1
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 7.6e-50 201.1 133 75.2
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 7.6e-50 201.1 127 76.4
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 9.9e-50 200.7 141 70.9
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 1.3e-49 200.3 136 70.6
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 1.3e-49 200.3 137 74.5
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 1.3e-49 200.3 181 62.4
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 2.9e-49 199.1 140 73.6
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 2.9e-49 199.1 142 69.0
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 3.8e-49 198.7 167 62.9
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 3.8e-49 198.7 177 60.5
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 3.8e-49 198.7 149 69.8
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 4.9e-49 198.4 116 82.8
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.9e-49 198.4 167 62.3
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.4e-48 196.8 134 73.1
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 2.4e-48 196.1 132 70.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 3.2e-48 195.7 134 70.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-48 195.7 138 71.7
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 4.2e-48 195.3 138 71.7
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 7.1e-48 194.5 178 61.2
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.1e-45 187.2 175 58.9
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 1.5e-45 186.8 137 67.2
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.9e-45 186.4 105 80.0
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 4.3e-45 185.3 134 70.1
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 9.6e-45 184.1 126 68.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 3.1e-43 179.1 146 65.1
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 6.5e-41 171.4 136 64.7
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 6.5e-41 171.4 140 65.7
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.1e-40 170.6 159 61.0
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 5.5e-40 168.3 140 62.1
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 1.2e-39 167.2 102 73.5
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 6.0e-39 164.9 127 61.4
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.8e-38 163.3 104 74.0
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 7.4e-37 157.9 107 71.0
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 9.6e-37 157.5 82 87.8
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 6.2e-36 154.8 173 54.9
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.1e-35 154.1 144 57.6
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 2.0e-34 149.8 118 61.9
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.3e-33 147.1 147 55.8
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.2e-32 142.1 97 68.0
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 3.0e-30 136.0 142 58.5
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.4e-27 127.1 129 51.2
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 3.1e-27 125.9 95 58.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 7.7e-26 121.3 134 48.5
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.4e-24 117.1 84 75.0
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 87 72.4
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 87 72.4
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 87 72.4
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 87 72.4
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 2.1e-23 113.2 93 54.8
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 2.7e-23 112.8 135 54.1
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 7.9e-23 111.3 61 91.8
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.8e-22 110.2 88 65.9
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.9e-22 109.0 101 48.5
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.7e-20 103.6 72 75.0
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 6.3e-20 101.7 49 85.7
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 8.2e-20 101.3 53 86.8
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.4e-19 100.5 80 63.8
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 2.4e-19 99.8 91 52.7
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.8e-17 92.4 52 78.8
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.7e-15 86.3 135 38.5
Prupe.5G082400 Prunus persica HOM05D005851 ORTHO05D007137 7.9e-15 84.7 115 54.8
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-14 82.8 49 71.4
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.7e-12 77.0 107 51.4
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 2.2e-12 76.6 113 45.1
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 2.2e-12 76.6 113 45.1
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 3.7e-12 75.9 61 72.1
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 4.8e-12 75.5 110 51.8
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.8e-11 73.6 51 70.6
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 1.2e-10 70.9 104 51.0
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 2.9e-09 66.2 106 49.1
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 3.8e-09 65.9 70 62.9
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 1.2e-07 60.8 68 54.4
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 6.1e-07 58.5 41 75.6
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.0e-07 58.2 40 72.5
Thhalv10027121m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.4e-06 57.4 68 48.5
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-06 56.6 41 73.2
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-06 56.6 41 73.2
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-06 56.6 41 73.2
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-06 56.6 41 73.2
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 8.8e-06 54.7 41 68.3


User provided reference genes

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