Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 9.5e-139 496.9 261 100.0
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 2.1e-125 452.6 255 93.3
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-124 449.9 265 91.3
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.2e-120 436.8 255 89.0
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 2.5e-115 419.1 255 87.1
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 6.9e-113 411.0 238 92.0
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 5.4e-110 401.4 259 79.9
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 4.3e-91 338.6 259 68.3
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.7e-87 326.6 259 65.6
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 9.7e-75 284.3 286 55.2
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.3e-74 283.9 285 55.8
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 8.2e-74 281.2 287 56.1
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.1e-73 280.8 262 59.9
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 2.6e-72 276.2 259 60.2
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 9.4e-70 267.7 267 55.8
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.2e-69 267.3 267 56.6
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 4.7e-69 265.4 265 55.1
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.5e-67 260.4 263 55.1
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.6e-67 259.6 263 55.9
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 3.3e-67 259.2 257 53.3
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 4.4e-67 258.8 263 55.5
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 4.8e-66 255.4 267 54.3
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 4.8e-66 255.4 255 56.9
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.1e-65 254.2 255 55.7
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.1e-65 254.2 268 54.1
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 4.1e-65 252.3 258 54.3
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.2e-64 250.8 263 53.6
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 4.5e-64 248.8 267 53.6
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 5.9e-64 248.4 301 47.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 2.9e-63 246.1 263 53.2
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 6.5e-63 245.0 267 50.6
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 8.5e-63 244.6 267 51.7
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.1e-62 244.2 262 51.5
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 1.9e-62 243.4 267 50.2
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.5e-62 243.0 267 51.7
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 7.2e-62 241.5 262 50.4
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.6e-61 240.4 255 52.5
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 2.7e-61 239.6 261 51.7
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.7e-61 239.6 260 51.9
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.7e-61 239.6 254 53.5
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 6.1e-61 238.4 266 50.8
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.8e-60 236.9 243 53.9
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 4.0e-60 235.7 250 52.8
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 8.8e-60 234.6 134 88.1
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.6e-59 233.0 262 50.8
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 5.7e-59 231.9 258 48.8
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 9.7e-59 231.1 253 49.4
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.3e-58 230.7 262 51.5
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.7e-58 230.3 263 47.5
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 2.2e-58 229.9 263 48.3
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.8e-58 229.6 255 49.8
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 4.8e-58 228.8 267 48.7
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 8.2e-58 228.0 251 50.6
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 8.2e-58 228.0 263 47.9
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.1e-57 227.6 276 47.1
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.4e-57 227.3 254 49.2
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 2.4e-57 226.5 251 50.2
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 3.1e-57 226.1 248 52.0
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 3.1e-57 226.1 262 51.5
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.1e-57 226.1 254 49.2
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 4.1e-57 225.7 251 50.2
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 5.3e-57 225.3 261 51.7
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 7.0e-57 224.9 285 47.0
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 4.5e-56 222.2 253 50.2
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 5.9e-56 221.9 254 48.0
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 7.7e-56 221.5 260 46.9
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.3e-55 220.7 254 49.6
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.7e-55 220.3 254 48.8
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.9e-55 219.5 254 49.2
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.8e-55 219.2 245 49.8
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 5.0e-55 218.8 255 47.5
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 8.5e-55 218.0 256 48.4
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 2.5e-54 216.5 299 44.1
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 9.4e-54 214.5 235 48.5
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 9.4e-54 214.5 287 45.6
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.6e-53 213.8 244 49.2
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 2.1e-53 213.4 290 42.4
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.6e-53 212.6 313 43.1
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 8.0e-53 211.5 259 47.5
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.0e-52 211.1 256 45.3
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.3e-52 209.9 264 45.5
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 4.0e-52 209.1 263 44.9
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 8.8e-52 208.0 252 45.6
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.8e-52 208.0 264 45.8
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 8.8e-52 208.0 262 46.6
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.0e-51 206.8 230 47.0
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.6e-51 206.5 230 47.4
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 7.5e-51 204.9 261 46.4
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 9.8e-51 204.5 253 45.1
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.7e-50 203.8 259 44.4
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 2.2e-50 203.4 230 46.1
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 8.3e-50 201.4 259 46.7
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.8e-49 200.3 261 44.4
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 1.8e-49 200.3 243 47.3
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 2.4e-49 199.9 261 44.4
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 2.4e-49 199.9 261 44.4
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 5.4e-49 198.7 269 43.1
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 9.1e-49 198.0 279 43.7
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 9.1e-49 198.0 279 43.7
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 9.1e-49 198.0 257 44.7
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.6e-48 197.2 262 42.7
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.6e-48 197.2 258 42.6
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 2.0e-48 196.8 258 45.3
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 3.5e-48 196.1 261 43.7
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 5.9e-48 195.3 258 45.7
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 7.7e-48 194.9 255 45.1
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.7e-47 193.7 257 44.4
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.7e-47 193.7 314 41.1
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 3.8e-47 192.6 262 43.9
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.5e-46 189.9 262 43.1
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.2e-45 187.6 258 43.0
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 4.7e-45 185.7 236 45.3
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 8.0e-45 184.9 193 54.4
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.8e-44 183.7 266 40.2
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.0e-43 180.3 243 45.7
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.2e-42 176.8 262 45.8
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 4.9e-42 175.6 177 53.7
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 4.9e-42 175.6 236 44.1
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 5.9e-40 168.7 231 42.4
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.3e-39 167.5 188 48.4
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.7e-39 167.2 188 48.4
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 6.6e-39 165.2 180 50.0
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.3e-38 162.9 260 38.1
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 5.6e-38 162.2 190 47.9
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 1.1e-33 147.9 255 37.6
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.8e-33 147.1 183 44.8
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 4.1e-33 146.0 134 55.2
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.7e-31 140.6 215 41.4
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 5.6e-30 135.6 194 40.2
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 9.5e-30 134.8 254 35.8
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 2.1e-29 133.7 209 39.2
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.3e-28 130.2 228 34.6
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 8.9e-28 128.3 174 43.1
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 8.9e-28 128.3 243 35.8
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 1.1e-25 121.3 254 32.7
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 2.0e-24 117.1 149 44.3
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.0e-23 113.2 123 46.3
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.1e-20 104.8 179 35.2
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 5.2e-20 102.4 237 33.8
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 5.8e-19 99.0 228 34.2
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.7e-18 97.4 100 48.0
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 6.4e-18 95.5 180 33.9
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 1.1e-17 94.7 134 43.3
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.9e-14 84.0 65 60.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 3.3e-14 83.2 189 33.9
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 6.2e-13 79.0 115 33.9
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 5.8e-11 72.4 183 31.1
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 2.4e-09 67.0 98 42.9
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 1.2e-08 64.7 60 56.7
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.7e-08 63.5 206 29.6
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 7.8e-08 62.0 167 26.9
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 1.1e-06 58.2 99 38.4


User provided reference genes

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