Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 640 100.0
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1228.0 728 84.5
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 730 84.8
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 728 84.3
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 728 84.3
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1224.5 730 84.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1208.4 730 83.3
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1164.4 734 79.8
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1155.2 734 78.7
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1147.1 734 78.3
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1120.9 733 75.0
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1099.3 733 74.2
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1097.8 730 74.4
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1097.4 734 73.6
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1095.1 731 74.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1095.1 731 74.4
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1094.3 731 73.1
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1091.6 731 73.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1090.9 732 74.0
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1090.9 733 73.5
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1089.3 734 73.7
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1087.8 731 73.3
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1086.6 732 72.8
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1086.2 732 73.6
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1086.2 742 72.9
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1085.9 731 73.3
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1085.1 730 74.2
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1084.3 733 73.3
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1083.6 731 73.1
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1083.2 732 73.0
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1082.4 732 73.0
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1082.0 730 73.2
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1081.6 732 73.4
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1080.9 730 73.2
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1080.9 732 73.1
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1080.5 730 72.9
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1080.1 734 73.2
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1079.7 731 73.2
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1078.9 734 72.9
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1078.5 730 73.3
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1078.5 730 72.6
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1078.2 734 72.9
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1077.0 732 73.1
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1075.8 732 73.2
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1075.1 733 72.9
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 8.8e-312 1073.2 732 73.1
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 8.8e-312 1073.2 732 73.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 8.8e-312 1072.8 732 72.7
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 1.8e-311 1072.0 732 72.4
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 2.2e-311 1071.6 733 72.3
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 3.1e-311 1071.2 730 73.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 3.1e-311 1071.2 749 71.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 3.1e-311 1071.2 733 72.4
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 6.6e-311 1070.1 735 72.1
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 1.5e-310 1068.9 730 73.0
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 4.3e-310 1067.4 732 71.9
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 1.3e-309 1065.8 730 72.7
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 1.6e-309 1065.4 724 73.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.6e-309 1065.4 775 69.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.1e-309 1065.1 731 72.1
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 2.1e-309 1065.1 732 72.5
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 4.8e-309 1063.9 733 72.2
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 4.8e-309 1063.9 774 69.4
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 6.2e-309 1063.5 730 72.3
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 1.8e-308 1062.0 733 71.8
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 3.1e-308 1061.2 731 72.4
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 9.0e-308 1059.7 731 72.5
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 1.2e-307 1059.3 732 71.6
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 1.3e-306 1055.8 730 71.4
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 2.2e-306 1055.0 730 72.1
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.9e-306 1053.9 780 68.5
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.9e-306 1053.9 780 68.5
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 8.4e-306 1053.1 697 74.3
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 1.4e-305 1052.4 713 73.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 1.9e-305 1052.0 730 71.6
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 4.2e-305 1050.8 730 71.5
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.2e-304 1049.3 723 71.8
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 3.5e-304 1047.7 730 70.4
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 7.4e-302 1040.0 730 70.7
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 1.3e-301 1039.3 731 70.6
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 2.8e-301 1038.1 731 71.3
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 2.8e-301 1038.1 730 70.5
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 3.7e-301 1037.7 782 67.9
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-300 1036.2 731 70.7
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 1.1e-300 1036.2 731 70.6
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 1.4e-300 1035.8 730 70.7
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 1.8e-300 1035.4 730 70.5
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 1.8e-300 1035.4 828 65.3
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-300 1034.6 731 71.0
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 4.1e-300 1034.2 730 70.5
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 6.9e-300 1033.5 730 70.4
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 6.9e-300 1033.5 731 70.5
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-299 1032.7 730 70.5
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.6e-299 1031.6 730 70.1
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 4.5e-299 1030.8 730 70.3
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 1.4e-297 1025.8 728 69.5
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.1e-292 1009.6 736 68.2
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 1.4e-292 1009.2 705 69.9
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 2.6e-291 1005.0 733 67.8
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 3.8e-290 1001.1 663 74.1
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 6.5e-290 1000.3 732 69.4
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.1e-288 995.3 750 66.7
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 3.6e-288 994.6 743 68.1
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 6.1e-288 993.8 743 68.0
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 1.0e-287 993.0 732 69.1
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 6.7e-287 990.3 742 67.8
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.4e-284 982.6 720 67.8
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 2.6e-283 978.4 659 73.1
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 8.5e-282 973.4 735 67.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 1.6e-280 969.1 683 69.3
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 1.1e-278 963.0 665 72.9
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.1e-276 954.5 741 63.8
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 5.3e-276 954.1 730 65.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 2.8e-269 931.8 733 62.9
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 2.2e-266 922.2 734 63.4
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 3.0e-263 911.8 705 63.5
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 5.2e-263 911.0 616 74.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.2e-259 899.8 616 71.9
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 6.1e-256 887.5 733 61.4
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.0e-254 882.5 706 62.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.1e-249 866.7 585 73.7
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 6.6e-242 840.9 752 59.6
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 2.2e-229 799.3 735 55.8
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.9e-229 798.9 726 54.8
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.4e-228 796.6 732 55.1
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.2e-223 778.1 701 58.2
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.4e-215 752.7 417 84.2
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.6e-203 713.4 690 52.2
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 9.0e-199 697.6 667 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.2e-198 697.2 655 53.9
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.2e-196 689.1 697 50.6
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 7.1e-188 661.4 424 73.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.9e-186 655.6 505 67.3
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.1e-186 655.2 422 73.5
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.9e-185 653.3 569 59.2
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 9.7e-185 651.0 705 48.7
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 5.0e-181 638.6 783 45.6
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 3.3e-161 572.8 377 72.9
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.2e-160 570.1 701 44.4
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 8.4e-96 355.5 183 84.7
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.1e-91 340.9 268 63.1
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.5e-89 334.7 209 76.6
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.2e-86 325.1 298 60.1
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.7e-86 323.9 357 50.7
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.9e-80 303.9 311 55.0
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.0e-73 281.2 325 48.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 4.5e-73 280.0 359 49.9
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.7e-72 278.1 168 73.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.0e-69 268.9 220 65.0
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.1e-66 257.3 191 65.4
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.1e-66 257.3 342 48.8
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 8.5e-64 249.2 285 51.2
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-63 248.4 202 66.3
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.1e-50 205.7 178 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.5e-47 193.4 219 45.2
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-45 188.7 131 64.1
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.5e-44 185.3 207 52.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 9.7e-44 182.6 206 53.9
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-43 181.4 101 78.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-33 148.3 224 38.8
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.5e-31 140.2 209 40.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.1e-30 138.3 138 55.1
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.8e-26 125.2 161 48.4
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 5.2e-21 107.1 57 89.5
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.5e-20 105.5 185 37.8
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.0e-20 105.1 185 37.8
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 4.4e-20 104.0 81 59.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 7.8e-17 93.2 79 57.0
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-16 90.5 50 80.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 6.6e-16 90.1 110 50.9
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-12 79.0 89 50.6
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-12 78.6 71 59.2
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.7e-11 75.5 46 73.9
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 2.4e-10 71.6 45 80.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 2.4e-10 71.6 264 27.7
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 5.4e-10 70.5 50 70.0
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 6.6e-08 63.5 46 69.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.9e-07 62.0 33 75.8
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 5.6e-07 60.5 40 67.5
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 2.8e-06 58.2 44 72.7


User provided reference genes

Program Settings