Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.8e-247 857.4 452 100.0
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.9e-199 698.0 377 95.5
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.3e-187 658.7 363 94.2
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.3e-187 657.5 363 93.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.4e-177 626.7 359 90.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 4.8e-146 521.9 366 73.8
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.0e-144 516.5 365 73.2
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 8.4e-143 511.1 366 71.6
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-121 441.0 368 62.8
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-120 436.8 363 62.5
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-120 436.8 363 63.4
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.0e-120 436.8 365 62.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 5.9e-120 435.3 367 61.9
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.0e-119 432.2 370 61.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 4.2e-118 429.1 368 62.2
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.5e-118 428.7 374 60.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.7e-117 425.6 361 62.6
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 6.1e-117 425.2 367 61.3
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.0e-117 424.9 361 62.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 8.0e-117 424.9 367 60.2
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 8.0e-117 424.9 362 61.9
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.3e-116 423.3 368 61.1
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 3.0e-116 422.9 368 58.4
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 5.2e-116 422.2 363 62.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-115 421.0 368 60.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.1e-115 421.0 367 63.2
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.3e-115 419.5 368 60.3
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.3e-114 417.5 375 60.0
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.2e-114 416.8 367 59.1
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.4e-113 414.1 367 58.9
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 4.1e-113 412.5 367 59.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 4.1e-113 412.5 367 59.7
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.2e-112 411.0 368 59.8
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.6e-112 410.6 367 59.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.5e-110 403.3 361 59.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 5.2e-108 395.6 367 57.2
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.6e-107 393.3 361 57.3
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 4.4e-107 392.5 363 59.0
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.3e-106 391.0 363 57.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.2e-106 390.2 372 55.9
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.8e-106 389.8 361 57.6
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.8e-106 389.8 365 57.5
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.4e-105 386.7 360 56.9
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 3.1e-105 386.3 361 57.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 3.1e-105 386.3 371 56.3
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.1e-105 386.0 363 56.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.1e-105 386.0 364 58.5
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 4.1e-105 386.0 365 56.2
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.1e-105 386.0 361 57.1
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 5.3e-105 385.6 363 56.5
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.2e-104 384.4 370 56.8
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.2e-104 384.4 374 54.3
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.0e-104 383.6 364 56.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.0e-104 383.6 362 57.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.7e-104 383.3 361 56.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.5e-104 382.9 205 96.6
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 4.5e-104 382.5 368 56.2
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.9e-104 382.1 365 57.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.0e-103 381.3 368 57.1
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.0e-103 381.3 361 56.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-102 377.9 363 55.6
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-102 377.9 368 55.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.5e-102 377.5 362 55.2
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.5e-102 377.5 377 52.5
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.9e-102 377.1 367 54.5
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.9e-102 377.1 329 60.8
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.5e-102 376.7 366 56.0
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.2e-102 376.3 366 55.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.2e-102 375.9 363 54.3
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.7e-101 373.2 361 55.1
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 6.1e-101 372.1 368 55.7
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.3e-100 370.2 371 52.6
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 5.2e-100 369.0 368 54.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.2e-99 367.9 490 45.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.0e-99 367.1 376 53.2
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 3.4e-99 366.3 364 54.4
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.4e-99 365.9 363 53.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.4e-99 365.9 366 52.5
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 9.8e-99 364.8 368 53.5
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.2e-98 363.6 321 60.4
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.8e-98 363.2 399 50.6
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.7e-98 362.8 364 53.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 6.3e-98 362.1 396 51.5
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 6.3e-98 362.1 364 53.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-97 361.3 362 53.6
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-97 360.9 312 61.9
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.1e-97 359.4 422 48.8
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.1e-97 359.4 387 51.7
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 5.4e-97 359.0 365 52.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 7.0e-97 358.6 365 52.9
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 9.1e-97 358.2 378 52.6
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 9.1e-97 358.2 367 53.4
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.6e-96 357.5 372 52.4
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-96 356.7 359 52.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 5.9e-96 355.5 364 52.2
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.9e-96 355.5 378 51.6
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-96 355.1 362 53.3
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.0e-95 354.8 512 42.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.3e-95 354.4 357 53.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.7e-95 354.0 371 53.4
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.9e-95 353.2 363 52.9
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.8e-95 352.8 385 51.4
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.0e-95 352.4 364 52.2
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 8.6e-95 351.7 363 52.6
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-94 351.3 365 52.1
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.9e-94 350.5 305 59.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 5.5e-94 349.0 349 53.3
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 5.5e-94 349.0 309 60.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 7.2e-94 348.6 349 53.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.6e-93 346.3 349 53.0
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.0e-92 344.7 364 51.4
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.4e-92 344.4 363 51.2
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 4.0e-92 342.8 374 50.8
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.2e-91 341.3 395 49.1
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.7e-91 339.0 400 48.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.4e-89 332.4 362 50.3
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.3e-87 327.8 286 59.1
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.9e-86 323.9 368 48.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.9e-86 323.9 563 39.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.5e-86 323.6 280 56.8
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.5e-86 323.6 351 51.3
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.3e-86 323.2 314 56.4
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.6e-86 322.4 371 48.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.8e-84 317.4 371 46.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.7e-82 310.8 372 46.8
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 5.4e-81 305.8 367 47.7
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.2e-80 304.7 308 53.2
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.6e-80 304.3 309 54.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 7.8e-80 302.0 362 48.9
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.6e-75 287.0 297 51.9
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 6.6e-71 272.3 472 38.1
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.9e-68 261.9 209 66.5
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.9e-66 256.9 207 63.3
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 7.8e-64 248.8 291 49.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.1e-61 240.7 205 58.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.8e-61 240.4 313 43.1
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.8e-60 237.7 208 59.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.4e-60 237.3 212 58.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.8e-59 232.6 308 44.2
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.9e-57 227.6 340 40.6
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.1e-57 225.7 213 55.9
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.6e-56 223.0 213 55.4
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.5e-54 218.0 375 34.4
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-53 214.5 160 70.0
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-52 209.5 160 68.8
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.9e-51 205.3 178 61.8
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.2e-50 204.1 178 61.8
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.9e-50 203.0 164 64.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-49 201.8 178 61.2
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.3e-49 198.7 172 62.2
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-47 194.9 176 60.8
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.5e-46 190.7 281 43.8
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.3e-46 189.1 379 33.5
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.3e-45 188.3 372 32.8
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.8e-45 187.2 380 33.4
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.6e-45 186.8 155 61.9
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.0e-44 183.3 178 57.9
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.9e-44 182.6 379 31.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 7.6e-43 179.1 198 47.0
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 6.4e-42 176.0 257 42.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.4e-41 174.9 336 33.0
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.0e-39 168.7 370 33.0
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.0e-35 154.5 161 55.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.8e-35 152.9 151 57.6
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.2e-33 147.1 106 72.6
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.1e-32 144.4 154 50.0
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.3e-31 141.7 154 49.4
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 9.6e-30 135.6 122 58.2
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.6e-30 135.6 130 56.9
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 7.6e-27 125.9 172 43.6
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.4e-26 122.5 131 48.9
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 9.3e-25 119.0 133 51.1
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 9.3e-25 119.0 130 44.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.9e-22 111.3 133 48.1
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 7.4e-22 109.4 327 28.4
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.6e-21 108.2 297 29.3


User provided reference genes

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