Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.6e-258 894.8 435 100.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-256 889.0 435 99.3
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.3e-254 881.7 435 98.6
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.7e-254 880.2 435 98.4
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.1e-245 852.8 434 94.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.2e-234 816.2 434 89.2
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 7.7e-234 813.5 434 88.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.2e-231 806.2 433 87.8
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.6e-231 805.8 434 87.6
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.4e-230 802.7 433 87.8
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.3e-230 802.0 434 87.8
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.0e-230 801.6 448 85.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.7e-228 794.7 434 87.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-226 788.9 434 84.1
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.2e-225 785.4 431 84.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.9e-225 785.0 433 85.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.8e-225 784.6 432 86.6
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 8.5e-225 783.5 431 84.0
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-224 783.1 433 85.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.5e-224 781.9 433 84.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.5e-224 781.9 433 84.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.2e-224 781.6 430 84.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.5e-224 780.8 432 84.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.5e-224 780.8 432 84.0
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 9.4e-224 780.0 433 85.5
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 2.1e-223 778.9 430 84.0
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.7e-223 778.5 433 83.6
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.6e-223 778.1 430 84.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 6.1e-223 777.3 433 85.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.4e-222 776.2 431 83.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.9e-222 774.6 434 83.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 8.8e-222 773.5 434 83.2
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.1e-221 773.1 434 83.4
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.1e-221 773.1 434 82.7
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-221 772.7 433 83.6
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.0e-221 772.3 434 84.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 7.4e-221 770.4 433 83.4
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.3e-220 769.6 434 83.6
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.7e-220 769.2 434 82.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.8e-220 768.5 432 82.9
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.1e-219 766.5 433 81.3
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.8e-219 765.8 433 82.4
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.1e-219 764.6 433 83.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 9.1e-219 763.5 433 82.9
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 2.6e-218 761.9 429 83.0
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 4.5e-218 761.1 429 82.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 4.5e-218 761.1 429 82.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-217 759.6 429 82.8
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.3e-217 759.6 433 81.8
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.9e-217 758.4 433 82.7
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 5.0e-217 757.7 431 82.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-216 756.5 431 80.7
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.4e-216 756.1 432 80.6
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.9e-216 755.7 429 82.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 4.2e-216 754.6 434 81.8
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.2e-216 754.6 430 82.1
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 5.5e-216 754.2 430 83.0
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.1e-215 752.3 429 82.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 8.0e-215 750.4 428 81.3
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 8.0e-215 750.4 429 82.1
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.0e-214 750.0 429 81.4
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.0e-214 748.4 433 80.4
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 5.2e-214 747.7 433 80.1
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 5.2e-214 747.7 429 81.4
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 8.8e-214 746.9 433 80.8
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.0e-213 745.7 472 75.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 4.4e-213 744.6 433 81.8
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 5.7e-213 744.2 429 80.7
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 5.7e-213 744.2 433 79.0
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.2e-212 742.3 431 79.4
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.8e-212 741.1 442 79.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 6.3e-212 740.7 433 81.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 8.2e-212 740.3 444 79.3
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 3.1e-211 738.4 434 79.0
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.3e-211 737.6 434 80.0
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.3e-211 737.6 428 81.3
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 7.0e-211 737.3 433 80.1
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.6e-210 736.1 434 79.3
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.6e-210 735.3 433 78.5
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.0e-209 733.4 490 71.4
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.5e-208 728.8 432 78.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.5e-205 719.5 504 70.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 4.4e-205 718.0 433 76.9
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 5.7e-205 717.6 414 82.4
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.7e-204 716.1 408 82.8
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 4.5e-202 708.0 401 82.0
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 5.9e-202 707.6 519 68.8
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.5e-200 702.2 433 76.2
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.5e-200 702.2 433 76.2
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 7.2e-200 700.7 434 76.5
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.1e-199 699.1 414 80.0
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 4.8e-196 688.0 399 79.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.6e-194 682.9 435 73.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 7.7e-194 680.6 387 82.2
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.3e-193 679.9 433 73.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.3e-193 679.9 434 75.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.9e-193 678.7 427 75.4
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.9e-193 678.7 433 73.9
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 4.2e-192 674.9 437 72.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.2e-188 662.5 433 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.0e-185 653.7 426 71.8
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 8.6e-185 650.6 433 69.1
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.4e-181 638.3 433 73.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.9e-180 634.8 427 69.8
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.3e-177 625.9 432 67.6
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.5e-176 622.5 427 69.6
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 4.0e-174 615.1 340 85.9
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.2e-173 613.6 432 67.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.9e-171 606.3 339 85.0
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-169 598.2 329 85.1
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 4.3e-168 595.1 335 83.3
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-167 593.6 385 74.3
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 3.2e-163 578.9 436 63.1
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.4e-163 578.2 437 63.8
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.1e-162 576.2 437 63.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.7e-162 575.9 354 78.5
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.3e-160 568.5 434 66.8
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.9e-156 555.8 426 60.3
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.9e-156 555.8 438 63.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.9e-153 545.4 289 88.9
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.4e-147 526.9 352 71.6
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.2e-146 523.9 336 73.8
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.1e-142 509.2 432 57.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.3e-137 493.0 382 65.4
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.9e-128 463.4 432 52.8
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 4.2e-115 419.1 352 62.2
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.1e-110 402.5 236 80.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.6e-106 389.4 223 82.5
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.3e-95 354.4 228 73.7
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 5.5e-75 285.8 187 70.1
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.9e-71 272.7 151 82.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-70 271.6 157 83.4
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.4e-70 270.4 134 98.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.0e-69 267.3 145 86.2
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.8e-65 252.3 197 66.5
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.0e-56 224.2 229 55.0
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-49 201.1 113 83.2
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.7e-47 194.5 107 80.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.6e-42 177.9 136 66.2
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.8e-34 149.8 88 80.7
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.1e-33 148.7 204 41.7
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-32 143.3 93 74.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 9.9e-32 142.1 165 48.5
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.7e-29 134.0 82 80.5
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-25 120.9 77 67.5
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-24 118.6 67 76.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.2e-23 114.4 246 34.1
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.0e-20 105.5 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 5.1e-20 103.2 72 61.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 3.7e-18 97.1 121 47.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 8.1e-18 95.9 61 77.0
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 7.9e-13 79.3 36 88.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-12 78.2 38 84.2
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 9.6e-11 72.4 98 44.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.4e-09 68.6 35 88.6
Pp3c7_6440 Physcomitrium patens HOM05D002051 ORTHO05D002041 7.6e-08 62.8 380 21.8
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 3.8e-07 60.5 35 74.3
Os06g0210200 Oryza sativa ssp. japonica HOM05D002051 ORTHO05D002041 5.0e-07 60.1 290 24.1
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 2.5e-06 57.8 271 21.8
Sed0002468 Sechium edule HOM05D002051 ORTHO05D002041 3.2e-06 57.4 379 22.7
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 4.2e-06 57.0 303 21.8
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 5.5e-06 56.6 269 23.8


User provided reference genes

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