Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 5.7e-141 504.2 251 100.0
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 7.0e-139 497.3 255 98.0
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 6.6e-137 490.7 255 97.3
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 8.9e-134 480.3 255 95.7
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 1.7e-129 466.1 253 91.7
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 9.9e-93 344.0 255 71.8
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 4.6e-90 335.1 251 69.3
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 3.1e-86 322.4 233 70.4
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 2.4e-83 312.8 240 67.9
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 2.4e-83 312.8 240 67.9
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 2.4e-78 296.2 258 60.9
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 6.9e-78 294.7 254 63.4
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 7.6e-77 291.2 246 61.8
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 1.0e-76 290.8 249 62.2
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 1.1e-75 287.3 245 61.6
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 1.4e-75 287.0 249 63.5
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 3.2e-75 285.8 248 60.5
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 5.5e-75 285.0 255 59.6
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 9.3e-75 284.3 253 60.5
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 1.6e-74 283.5 254 59.8
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 2.1e-74 283.1 254 59.8
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 4.6e-74 282.0 244 61.9
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.3e-73 280.4 248 60.1
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 1.8e-73 280.0 253 60.1
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 1.8e-73 280.0 245 59.6
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 1.8e-73 280.0 247 61.1
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 3.0e-73 279.3 249 59.4
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 3.0e-73 279.3 248 60.5
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 3.9e-73 278.9 242 62.8
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 3.9e-73 278.9 248 60.1
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 3.9e-73 278.9 246 61.8
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 6.7e-73 278.1 254 58.3
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 6.7e-73 278.1 247 60.3
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 1.5e-72 276.9 250 61.2
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 1.5e-72 276.9 250 61.2
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 1.5e-72 276.9 247 59.9
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 1.5e-72 276.9 247 60.3
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 4.3e-72 275.4 251 58.6
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 5.7e-72 275.0 248 59.3
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 7.4e-72 274.6 251 59.8
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 1.6e-71 273.5 242 61.6
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 1.6e-71 273.5 244 60.7
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 2.1e-71 273.1 242 61.6
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 2.1e-71 273.1 250 58.8
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 3.7e-71 272.3 251 60.6
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 4.8e-71 271.9 235 61.3
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 3.1e-70 269.2 246 60.2
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 5.3e-70 268.5 254 59.1
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 5.3e-70 268.5 251 56.6
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 5.3e-70 268.5 235 61.3
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 6.9e-70 268.1 246 59.3
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 9.0e-70 267.7 288 53.5
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 9.0e-70 267.7 248 58.1
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.2e-69 267.3 239 59.4
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-69 267.3 239 58.6
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 1.5e-69 266.9 246 58.9
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 2.0e-69 266.5 251 59.4
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 2.6e-69 266.2 239 58.2
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 2.6e-69 266.2 239 58.2
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 3.4e-69 265.8 240 60.8
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 4.5e-69 265.4 250 60.4
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 4.5e-69 265.4 248 58.5
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 4.5e-69 265.4 247 58.3
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 5.8e-69 265.0 239 57.7
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 5.8e-69 265.0 239 58.2
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 5.8e-69 265.0 239 58.2
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 1.3e-68 263.8 239 58.2
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 1.3e-68 263.8 254 58.3
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 2.9e-68 262.7 239 58.2
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.9e-68 262.7 239 58.2
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 5.0e-68 261.9 256 56.6
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 6.5e-68 261.5 239 57.7
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 8.4e-68 261.2 239 57.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.1e-67 260.8 239 57.7
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.4e-67 260.4 239 57.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.4e-67 260.4 239 57.3
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 2.5e-67 259.6 239 57.7
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 4.2e-67 258.8 251 57.8
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 4.2e-67 258.8 239 56.9
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 4.2e-67 258.8 250 57.2
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 1.2e-66 257.3 234 59.8
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 1.6e-66 256.9 239 58.6
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 1.6e-66 256.9 244 58.2
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 1.0e-65 254.2 233 59.2
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.9e-65 252.3 236 57.2
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 1.1e-64 250.8 240 57.1
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 1.5e-64 250.4 249 55.4
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 2.5e-64 249.6 258 54.7
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 7.4e-64 248.1 245 58.4
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 9.7e-64 247.7 245 55.5
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 1.3e-63 247.3 250 54.8
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 1.3e-63 247.3 247 55.9
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 2.2e-63 246.5 235 56.6
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 2.2e-63 246.5 255 53.3
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 3.7e-63 245.7 237 55.7
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 4.8e-63 245.4 245 55.5
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 8.2e-63 244.6 256 53.9
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 8.2e-63 244.6 233 57.9
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 1.0e-60 237.7 248 54.8
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 8.5e-60 234.6 193 63.7
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 5.5e-59 231.9 196 60.2
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 2.5e-56 223.0 245 53.9
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 1.3e-55 220.7 190 62.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 6.3e-55 218.4 246 52.8
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 9.1e-54 214.5 234 50.0
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 9.1e-54 214.5 233 48.9
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 5.9e-53 211.8 322 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 4.7e-50 202.2 233 48.9
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 6.1e-50 201.8 186 58.1
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 8.8e-49 198.0 212 54.7
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 9.7e-48 194.5 240 46.2
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 7.0e-46 188.3 250 47.6
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 3.8e-44 182.6 196 53.1
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 3.6e-42 176.0 168 54.8
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 1.5e-40 170.6 218 45.0
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.3e-39 167.5 184 52.2
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 7.0e-38 161.8 137 59.9
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 1.1e-35 154.5 226 38.5
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 3.6e-34 149.4 138 60.9
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 1.1e-30 137.9 139 56.1
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 1.7e-28 130.6 133 54.1
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.8e-25 120.6 231 33.8
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 4.1e-22 109.4 231 32.0
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 5.0e-20 102.4 82 63.4
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 1.4e-17 94.4 79 59.5
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.8e-17 94.0 82 61.0
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 3.0e-17 93.2 121 45.5
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 5.2e-17 92.4 79 55.7
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 1.1e-11 74.7 77 53.2
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.5e-11 74.3 67 65.7
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 2.2e-07 60.5 47 59.6
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 4.9e-07 59.3 46 58.7


User provided reference genes

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