Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.2e-155 553.1 280 100.0
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.6e-152 542.7 280 97.1
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.6e-152 542.7 280 97.1
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 8.0e-152 540.4 280 96.8
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.1e-148 528.1 282 95.4
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.2e-147 526.6 280 93.2
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 4.6e-139 498.0 280 86.4
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.0e-138 495.4 280 85.7
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.1e-137 493.4 280 85.7
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.5e-129 466.5 280 80.7
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.6e-128 463.0 257 84.4
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 2.8e-128 462.2 256 83.6
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.6e-126 455.7 277 78.3
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 5.8e-126 454.5 281 78.6
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 9.9e-126 453.8 279 77.8
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.3e-125 453.4 280 77.1
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.2e-125 452.6 257 80.5
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 8.4e-125 450.7 257 82.5
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.4e-124 449.9 257 80.9
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.4e-124 449.9 280 78.2
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.4e-124 449.9 257 82.1
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.9e-124 449.5 257 80.5
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.2e-124 448.7 280 76.8
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.1e-124 447.6 257 81.7
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 9.3e-124 447.2 257 81.3
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.2e-123 446.8 251 80.9
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.2e-123 446.8 251 80.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.6e-123 446.4 257 80.9
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.7e-123 445.7 257 81.3
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 2.7e-123 445.7 257 80.5
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 6.0e-123 444.5 257 79.0
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 6.0e-123 444.5 258 80.6
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 7.8e-123 444.1 251 81.3
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 7.8e-123 444.1 280 76.1
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.9e-122 441.8 257 80.2
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 5.1e-122 441.4 259 80.3
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 8.7e-122 440.7 280 76.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-121 440.3 258 81.0
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.5e-121 439.9 258 79.5
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.9e-121 439.5 256 78.5
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.5e-121 439.1 257 79.0
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.3e-121 438.7 277 76.2
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.3e-121 438.7 263 78.7
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 7.3e-121 437.6 256 80.1
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 7.3e-121 437.6 257 77.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.8e-120 435.6 256 79.7
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 3.6e-120 435.3 259 79.2
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 6.2e-120 434.5 280 75.0
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.1e-119 433.7 259 78.8
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.1e-119 433.7 257 77.4
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.1e-119 433.7 258 79.1
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.1e-119 433.7 257 79.8
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.8e-119 433.0 278 75.2
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.8e-119 433.0 259 78.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.8e-119 433.0 250 80.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.1e-119 432.2 258 78.3
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 3.1e-119 432.2 257 79.0
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 4.0e-119 431.8 257 76.3
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 4.0e-119 431.8 259 78.4
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.0e-119 431.8 280 74.6
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 4.0e-119 431.8 261 80.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 9.0e-119 430.6 265 77.4
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 9.0e-119 430.6 257 76.3
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.5e-118 429.9 280 74.3
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.5e-118 429.9 257 78.6
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.5e-118 429.9 279 74.9
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.5e-118 429.9 281 74.7
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.0e-118 429.5 281 74.7
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 3.4e-118 428.7 278 74.5
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 4.5e-118 428.3 276 76.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 9.9e-118 427.2 278 74.1
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 9.9e-118 427.2 257 77.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.3e-117 426.8 259 77.6
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.7e-117 426.4 257 78.2
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.9e-117 425.6 278 73.7
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 4.9e-117 424.9 281 74.4
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.4e-117 424.5 258 79.1
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.4e-116 423.3 258 78.7
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.9e-116 422.9 257 76.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.2e-116 421.8 257 78.2
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 7.1e-116 421.0 252 78.2
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 9.3e-116 420.6 257 76.7
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.2e-115 420.2 257 77.4
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.6e-115 419.9 256 76.6
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.0e-115 417.9 280 72.9
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 7.9e-115 417.5 257 73.9
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 3.9e-114 415.2 285 73.0
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.9e-113 412.9 270 71.5
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.9e-113 412.9 252 77.8
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.4e-113 411.0 277 70.4
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.8e-112 409.1 250 76.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.7e-112 408.7 275 70.9
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 6.2e-112 407.9 257 74.3
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.1e-111 405.6 253 77.5
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.1e-111 405.6 259 74.5
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.3e-111 404.8 250 73.6
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 9.0e-111 404.1 281 69.8
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.4e-110 402.1 259 74.5
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.4e-110 402.1 255 74.5
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 7.6e-110 401.0 250 74.0
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 8.4e-109 397.5 257 75.5
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.6e-107 393.3 261 72.0
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 6.0e-107 391.3 257 73.9
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 3.0e-106 389.0 281 70.8
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.1e-105 387.1 296 65.2
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.9e-105 386.3 231 72.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 6.2e-104 381.3 231 72.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.5e-102 376.7 210 82.4
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.6e-102 375.9 235 74.5
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.7e-101 373.2 212 80.7
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.9e-101 372.5 286 66.4
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 6.5e-101 371.3 239 72.8
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 7.9e-99 364.4 231 74.5
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 9.7e-97 357.5 223 70.0
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.8e-96 355.9 218 71.1
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 3.7e-96 355.5 234 68.4
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.1e-95 354.0 221 68.8
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.1e-92 344.0 191 80.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.5e-92 342.8 222 68.0
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.2e-92 342.4 278 61.5
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.6e-91 338.6 221 71.5
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.5e-89 332.8 231 68.8
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.7e-88 328.9 257 62.6
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.5e-86 323.6 324 53.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.7e-83 312.0 164 82.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.5e-81 307.0 284 57.7
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 8.2e-80 301.2 220 59.1
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.5e-77 291.6 198 65.2
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.5e-76 290.4 168 80.4
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.2e-75 287.3 162 80.9
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.6e-65 253.1 144 84.7
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.5e-65 251.5 163 74.8
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.5e-62 242.3 138 79.0
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 4.5e-62 242.3 244 54.1
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.0e-54 216.9 204 55.9
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.2e-49 201.1 121 73.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.1e-47 192.6 114 78.1
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.6e-30 137.5 105 64.8
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.9e-28 130.6 72 86.1
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.5e-28 128.3 81 77.8
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 1.2e-25 121.3 81 71.6
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-23 114.4 66 69.7
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.0e-21 108.2 65 70.8
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 3.3e-20 103.2 64 76.6
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 5.2e-18 95.9 52 78.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.8e-16 89.7 87 55.2
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.4e-16 88.6 66 68.2
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.3e-13 81.3 93 50.5
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.3e-13 81.3 68 57.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.6e-11 74.3 73 47.9
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.6e-11 73.2 70 57.1
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 1.8e-10 70.9 47 76.6
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 9.9e-09 65.1 50 62.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 3.8e-08 63.2 90 41.1
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.9e-08 62.8 60 55.0


User provided reference genes

Program Settings