Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 9.4e-121 436.8 211 100.0
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 9.8e-118 426.8 211 97.6
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.8e-117 425.2 211 97.2
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.3e-117 423.7 211 96.7
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 7.5e-110 400.6 211 90.5
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.5e-107 391.3 212 91.0
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 1.9e-100 369.4 203 85.2
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 4.1e-100 368.2 203 85.2
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 212 81.1
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 4.6e-99 364.8 213 80.3
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.3e-98 363.2 211 80.1
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.7e-98 362.8 213 81.7
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 2.3e-98 362.5 213 79.3
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 3.0e-98 362.1 213 80.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 3.9e-98 361.7 199 80.4
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 6.6e-98 360.9 210 80.5
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 6.6e-98 360.9 199 84.4
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-97 360.1 211 79.6
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 1.5e-97 359.8 200 82.0
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 4.3e-97 358.2 201 81.1
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 5.6e-97 357.8 198 82.8
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 7.3e-97 357.5 211 78.7
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 7.3e-97 357.5 199 81.9
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 9.5e-97 357.1 213 79.3
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 9.5e-97 357.1 203 80.8
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 9.5e-97 357.1 203 80.3
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.6e-96 356.3 213 77.5
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 2.1e-96 355.9 211 80.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.1e-96 355.9 213 79.8
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 2.8e-96 355.5 199 82.4
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 2.8e-96 355.5 211 78.7
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 6.2e-96 354.4 208 79.8
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.1e-95 353.6 201 81.1
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.4e-95 353.2 199 82.4
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.3e-95 352.4 200 81.0
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.3e-95 352.4 203 80.3
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 3.1e-95 352.1 204 80.9
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 4.0e-95 351.7 203 78.8
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 5.2e-95 351.3 213 79.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 6.8e-95 350.9 193 83.4
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 8.9e-95 350.5 213 78.4
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.2e-94 350.1 201 78.6
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.2e-94 350.1 199 81.9
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.5e-94 349.7 213 77.9
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.5e-94 349.7 204 77.0
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.0e-94 349.4 210 76.7
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.0e-94 349.4 203 80.8
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.0e-94 349.4 213 78.9
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.4e-94 348.6 213 78.9
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 4.4e-94 348.2 213 76.5
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 5.8e-94 347.8 234 71.8
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.8e-94 347.8 200 81.0
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 5.8e-94 347.8 203 79.3
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 5.8e-94 347.8 203 78.8
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 9.8e-94 347.1 199 81.4
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 9.8e-94 347.1 203 79.3
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 9.8e-94 347.1 203 77.3
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.3e-93 346.7 199 80.4
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.3e-93 346.7 203 78.3
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.3e-93 346.7 200 81.0
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.7e-93 346.3 213 77.0
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 1.7e-93 346.3 211 76.8
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 4.9e-93 344.7 210 75.2
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 4.9e-93 344.7 199 80.4
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 6.4e-93 344.4 199 78.4
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 6.4e-93 344.4 203 78.3
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 6.4e-93 344.4 199 80.4
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 6.4e-93 344.4 199 80.4
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 6.4e-93 344.4 199 80.4
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 8.3e-93 344.0 203 78.3
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 8.3e-93 344.0 203 78.8
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.4e-92 343.2 203 77.3
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.4e-92 342.4 213 75.1
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 3.2e-92 342.0 201 77.1
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 3.2e-92 342.0 198 77.8
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.2e-92 342.0 200 79.5
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 3.2e-92 342.0 203 78.8
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.1e-92 341.7 201 78.1
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 5.4e-92 341.3 201 77.1
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 7.1e-92 340.9 201 77.1
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.1e-92 340.9 199 77.4
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.2e-91 340.1 208 78.4
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.2e-91 340.1 211 75.4
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 1.2e-91 340.1 199 76.9
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.6e-91 339.7 213 76.1
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.7e-91 339.0 199 76.9
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 2.7e-91 339.0 201 76.6
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 3.5e-91 338.6 199 76.4
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.5e-91 338.6 208 76.0
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 4.6e-91 338.2 213 74.2
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 6.0e-91 337.8 200 76.0
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 6.0e-91 337.8 201 75.6
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 7.8e-91 337.4 201 76.1
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 1.3e-90 336.7 199 77.4
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 3.0e-90 335.5 199 78.4
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 5.1e-90 334.7 201 75.1
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 6.6e-90 334.3 201 75.1
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 6.6e-90 334.3 201 76.1
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.1e-89 333.6 199 77.4
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 7.3e-89 330.9 204 75.5
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 7.3e-89 330.9 200 77.0
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.1e-88 329.3 201 73.1
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 4.7e-88 328.2 199 75.9
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 4.7e-88 328.2 203 73.9
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 2.3e-87 325.9 200 75.0
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 3.1e-87 325.5 201 73.6
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 3.1e-87 325.5 203 72.9
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 5.2e-87 324.7 209 74.6
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 6.8e-87 324.3 221 68.8
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 7.6e-86 320.9 253 64.8
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 7.6e-86 320.9 201 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 9.9e-86 320.5 198 73.2
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 3.7e-85 318.5 204 72.1
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 1.6e-83 313.2 204 71.1
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.7e-82 309.7 166 84.9
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.1e-80 302.8 285 54.7
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.8e-79 299.7 212 67.5
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.2e-78 297.0 165 84.8
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.7e-77 293.1 173 80.9
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 4.9e-69 265.0 145 84.1
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 1.9e-68 263.1 145 82.1
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.3e-66 256.1 172 70.3
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 3.0e-66 255.8 429 38.9
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.3e-64 250.4 200 62.5
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 2.4e-63 246.1 145 74.5
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 5.8e-54 214.9 113 86.7
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.6e-51 206.8 135 69.6
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.6e-48 196.8 195 49.7
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 5.3e-47 191.8 125 72.8
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.2e-45 186.4 200 46.5
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 6.3e-40 168.3 195 43.1
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.1e-39 167.5 109 73.4
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.1e-36 157.5 140 55.7
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.8e-34 150.2 88 73.9
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 6.7e-34 148.3 90 77.8
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 4.3e-33 145.6 96 72.9
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 2.2e-32 143.3 115 63.5
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.1e-31 139.4 73 83.6
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.1e-17 94.4 69 65.2
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.1e-17 94.4 72 63.9
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 7.5e-17 91.7 56 73.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.1e-15 86.3 54 77.8
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 4.1e-15 85.9 66 66.7
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.2e-09 67.8 35 80.0
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.7e-08 62.8 54 66.7
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 1.1e-07 61.2 35 65.7
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 1.8e-07 60.5 40 72.5
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.1e-07 59.7 32 81.2


User provided reference genes

Program Settings