Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-37 159.1 79 100.0
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.4e-37 158.3 79 98.7
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.0e-36 153.7 79 96.2
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 1.7e-35 152.1 79 96.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 3.0e-35 151.4 79 92.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 8.6e-35 149.8 86 90.7
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.0e-31 138.7 79 81.0
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.6e-31 138.3 79 81.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 4.4e-31 137.5 79 81.0
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.3e-30 136.0 79 79.7
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 75.9
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 78.5
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 77.2
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 3.2e-29 131.3 79 77.2
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 72.2
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 73.4
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 73.4
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 73.4
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 74.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 73.4
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 73.4
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 69.6
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 5.1e-27 124.0 77 70.1
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 70.9
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 72.2
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 6.6e-27 123.6 78 73.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 72.2
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 69.6
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.1e-26 122.9 79 69.6
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 73.7
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 72.2
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 72.4
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 69.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 68.4
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 69.6
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 73.4
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 74.7
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 72.2
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 7.3e-26 120.2 76 72.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 67.1
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 74.7
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 7.3e-26 120.2 75 70.7
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 68.4
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 9.6e-26 119.8 75 70.7
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 9.6e-26 119.8 78 70.5
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 9.6e-26 119.8 78 70.5
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 68.4
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.2e-25 119.4 77 70.1
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 65.8
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 68.4
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.2e-25 119.4 75 70.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.6e-25 119.0 77 68.8
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.1e-25 118.6 76 67.1
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.1e-25 118.6 80 67.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 67.1
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 72.2
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 65.8
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 67.1
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.2e-25 117.1 72 72.2
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.2e-25 117.1 72 72.2
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 69.6
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 65.8
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 6.2e-25 117.1 77 68.8
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 67.1
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 67.1
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.1e-24 116.3 77 66.2
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 70.9
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.4e-24 115.9 76 65.8
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.4e-24 115.9 78 69.2
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.4e-24 115.9 76 68.4
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.4e-24 115.9 80 67.5
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.4e-24 115.9 101 57.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.4e-24 115.9 79 68.4
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 65.8
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 77 67.5
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 80 67.5
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 63.3
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 68.4
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 63.3
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 65.8
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.0e-24 114.4 80 68.8
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.0e-24 114.4 76 68.4
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 5.2e-24 114.0 74 70.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 5.2e-24 114.0 74 70.3
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 62.0
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 64.6
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 64.6
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.6e-23 111.7 70 72.9
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 76 67.1
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 64.6
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 9.9e-23 109.8 79 63.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.3e-22 109.4 77 63.6
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 64.5
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 62.0
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-22 109.0 75 66.7
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-22 109.0 75 66.7
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.7e-22 109.0 75 66.7
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 75 66.7
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 64.6
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 64.6
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 2.9e-22 108.2 76 65.8
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.8e-22 107.8 61 77.0
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 3.8e-22 107.8 78 62.8
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 8.4e-22 106.7 60 80.0
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 8.4e-22 106.7 66 72.7
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.1e-21 106.3 61 75.4
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.1e-21 106.3 65 72.3
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.1e-21 106.3 63 74.6
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.9e-21 105.5 65 72.3
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 3.2e-21 104.8 64 73.4
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 59.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 59.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 59.5
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 5.4e-21 104.0 57 84.2
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 9.3e-21 103.2 60 76.7
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.2e-20 102.8 79 58.2
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.6e-20 102.4 79 57.0
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.7e-20 101.7 67 65.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 63.3
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 3.5e-20 101.3 79 57.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.5e-20 101.3 69 62.3
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 6.0e-20 100.5 61 72.1
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.0e-19 99.8 57 78.9
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.3e-19 99.4 79 55.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 5.1e-19 97.4 55 78.2
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 6.6e-19 97.1 76 55.3
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.9e-18 95.5 63 66.7
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 56.2
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.3e-18 94.4 79 53.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 4.3e-18 94.4 53 77.4
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 7.3e-18 93.6 54 72.2
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.6e-17 92.4 65 64.6
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.6e-17 92.4 73 54.8
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.8e-17 91.7 74 52.7
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.6e-17 91.3 73 53.4
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 3.6e-17 91.3 59 64.4
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 4.8e-17 90.9 63 65.1
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 8.1e-17 90.1 73 50.7
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 3.4e-15 84.7 66 63.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.9e-15 83.2 67 53.7
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 6.4e-14 80.5 64 56.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.1e-13 77.0 66 57.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 3.3e-10 68.2 73 45.2
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.3e-10 68.2 79 41.8
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.0e-07 58.9 48 54.2
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-06 55.8 79 40.5


User provided reference genes

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