Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.2e-91 339.3 225 100.0
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 8.3e-83 310.8 225 95.1
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.1e-82 307.8 225 93.8
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 1.5e-71 273.5 225 80.9
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 1.3e-64 250.4 237 68.8
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.8e-40 170.2 149 90.6
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 4.8e-30 135.6 169 53.8
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.3e-27 127.5 171 51.5
Prupe.1G524300 Prunus persica HOM05D004728 ORTHO05D002375 3.6e-25 119.4 137 54.0
FAN18G3056 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.5e-19 98.6 107 66.4
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 2.1e-17 93.6 136 51.5
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 2.7e-17 93.2 140 52.1
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 3.6e-17 92.8 133 49.6
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 4.7e-17 92.4 128 54.7
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 6.1e-17 92.0 142 47.2
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.3e-16 90.1 138 51.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 3.0e-16 89.7 138 50.7
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 8.8e-16 88.2 157 47.1
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.5e-15 87.4 124 50.8
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 1.5e-15 87.4 125 52.8
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 3.3e-15 86.3 130 49.2
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 9.7e-15 84.7 124 50.0
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 2.8e-14 83.2 121 52.1
VMungo0647G1593 Vigna mungo HOM05D012119 ORTHO05D002375 4.8e-14 82.4 158 40.5
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.8e-13 80.5 135 48.9
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.4e-13 80.1 137 46.7
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.1e-13 79.7 162 45.7
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 5.3e-13 79.0 132 48.5
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 7.0e-13 78.6 110 48.2
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 1.2e-12 77.8 111 49.5
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.6e-12 77.4 118 50.8
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 2.6e-12 76.6 112 50.0
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.6e-12 76.6 117 50.4
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 4.5e-12 75.9 137 44.5
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 4.5e-12 75.9 113 45.1
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 1.0e-11 74.7 106 49.1
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 1.0e-11 74.7 106 49.1
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.3e-11 74.3 113 40.7
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 1.7e-11 73.9 135 45.2
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 1.7e-11 73.9 132 44.7
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 2.2e-11 73.6 108 50.9
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 3.8e-11 72.8 144 41.7
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 6.5e-11 72.0 144 41.7
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.5e-11 72.0 84 56.0
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 1.5e-10 70.9 106 52.8
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.5e-10 70.9 105 48.6
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.5e-10 70.9 100 50.0
Phvul.008G177300 Phaseolus vulgaris HOM05D012119 ORTHO05D002375 2.5e-10 70.1 81 54.3
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 5.5e-10 68.9 112 46.4
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 5.5e-10 68.9 186 41.9
MELO3C011050.2 Cucumis melo HOM05D039494 ORTHO05D002375 9.4e-10 68.2 150 33.3
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 9.4e-10 68.2 143 44.8
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 1.2e-09 67.8 124 45.2
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 1.6e-09 67.4 117 43.6
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 1.6e-09 67.4 66 42.4
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 2.1e-09 67.0 106 42.5
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 2.7e-09 66.6 168 31.0
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 3.6e-09 66.2 175 37.1
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.7e-09 65.9 113 42.5
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 4.7e-09 65.9 139 38.1
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.1e-09 65.5 112 48.2
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 8.0e-09 65.1 113 47.8
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 8.0e-09 65.1 104 48.1
Lalb_Chr10g0102541 Lupinus albus HOM05D012119 ORTHO05D002375 1.0e-08 64.7 95 52.6
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.8e-08 63.9 162 27.2
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 2.3e-08 63.5 125 39.2
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 3.0e-08 63.2 103 48.5
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 4.0e-08 62.8 86 53.5
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.2e-08 62.4 110 31.8
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.2e-08 62.4 110 31.8
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 5.2e-08 62.4 95 48.4
Glyma.14G177800 Glycine max HOM05D012119 ORTHO05D002375 5.2e-08 62.4 71 40.8
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 6.7e-08 62.0 160 28.1
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 1.1e-07 61.2 96 37.5
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 1.1e-07 61.2 106 47.2
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 1.5e-07 60.8 138 30.4
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 2.0e-07 60.5 137 34.3
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 2.6e-07 60.1 109 33.0
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 3.3e-07 59.7 115 40.9
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 3.3e-07 59.7 116 46.6
PSO700G0018 Papaver somniferum HOM05D015253 ORTHO05D002375 4.4e-07 59.3 72 40.3
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.3e-06 57.8 95 34.7
arahy.Tifrunner.gnm1.ann1.HV7MU1 Arachis hypogaea HOM05D012119 ORTHO05D002375 1.7e-06 57.4 147 36.1
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 1.7e-06 57.4 137 38.7
ClCG08G011340 Citrullus lanatus HOM05D039494 ORTHO05D002375 1.7e-06 57.4 92 54.3
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 1.7e-06 57.4 148 37.2
arahy.Tifrunner.gnm1.ann1.3HQ27V Arachis hypogaea HOM05D012119 ORTHO05D002375 2.8e-06 56.6 84 48.8
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 3.7e-06 56.2 105 42.9
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 4.8e-06 55.8 176 39.2
Glyma.02G210000 Glycine max HOM05D012119 ORTHO05D002375 8.2e-06 55.1 69 53.6
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 8.2e-06 55.1 56 46.4


User provided reference genes

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