Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 9.1e-179 630.2 329 100.0
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.0e-169 597.8 329 95.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.3e-156 556.6 329 90.6
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 9.5e-136 487.3 315 80.6
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 9.9e-125 450.7 331 74.0
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.9e-124 448.4 289 84.1
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 9.2e-123 444.1 316 75.0
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 4.1e-115 418.7 314 69.7
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 3.0e-113 412.5 329 68.1
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 3.9e-113 412.1 301 71.4
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 5.1e-113 411.8 334 67.1
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 5.1e-113 411.8 334 67.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 6.6e-113 411.4 301 71.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 9.6e-112 407.5 325 67.7
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.2e-111 407.1 306 68.3
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 4.7e-111 405.2 322 65.2
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 4.7e-111 405.2 327 67.6
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 6.2e-111 404.8 344 64.8
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.0e-110 402.1 304 69.7
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 9.0e-110 401.0 297 70.0
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.0e-109 399.8 318 66.7
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.6e-109 399.4 294 68.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.6e-109 399.4 290 70.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.4e-109 399.1 307 66.8
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 3.4e-109 399.1 315 67.0
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 7.6e-109 397.9 299 67.9
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 9.9e-109 397.5 334 65.0
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.3e-108 397.1 306 67.6
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.3e-108 397.1 291 69.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.7e-108 396.7 317 65.9
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 6.4e-108 394.8 290 70.0
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 8.4e-108 394.4 307 67.4
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.1e-107 394.0 288 68.8
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.1e-107 394.0 302 66.9
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.1e-107 394.0 333 64.3
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.9e-107 393.3 322 66.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.9e-107 393.3 298 68.1
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.4e-107 392.9 329 63.5
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 7.1e-107 391.3 300 66.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 9.3e-107 391.0 309 66.7
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 9.3e-107 391.0 312 66.0
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.2e-106 390.6 316 66.5
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.7e-106 389.4 290 68.6
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 3.5e-106 389.0 329 64.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.6e-106 388.7 320 65.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 4.6e-106 388.7 311 63.7
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 7.8e-106 387.9 283 69.6
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 7.8e-106 387.9 310 66.5
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.3e-105 387.1 316 64.6
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.3e-105 386.3 333 62.8
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.0e-105 386.0 299 66.2
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.9e-105 385.6 291 67.7
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 5.1e-105 385.2 319 65.8
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 5.1e-105 385.2 295 67.8
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 5.1e-105 385.2 337 62.9
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 8.7e-105 384.4 296 65.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 8.7e-105 384.4 311 65.3
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.1e-104 384.0 347 61.4
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-104 382.9 234 80.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 2.5e-104 382.9 321 64.8
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.3e-104 382.1 338 61.8
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.6e-104 381.7 321 64.5
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.6e-104 381.7 321 64.5
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 9.6e-104 380.9 290 65.9
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.6e-103 380.2 338 62.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.8e-103 379.4 296 66.9
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.8e-103 379.4 338 62.1
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.8e-103 379.4 330 63.0
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 3.6e-103 379.0 288 65.6
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 4.8e-103 378.6 331 61.9
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.1e-103 377.9 296 64.9
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.1e-103 377.9 296 64.9
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.4e-102 376.3 293 65.9
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 5.8e-101 371.7 288 65.6
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 5.8e-101 371.7 230 78.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 9.9e-101 370.9 230 78.3
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.7e-100 370.2 230 77.8
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 2.9e-100 369.4 335 60.6
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.9e-100 369.4 300 64.0
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.4e-99 366.3 346 60.7
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 3.2e-99 365.9 324 60.2
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.2e-99 365.9 318 61.0
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 7.1e-99 364.8 345 57.4
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 3.5e-98 362.5 229 76.0
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.5e-98 362.5 290 61.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 4.6e-98 362.1 269 67.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 7.9e-98 361.3 307 59.3
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.0e-97 360.9 236 75.4
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.3e-97 359.8 307 60.3
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.3e-97 359.8 269 66.5
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 8.7e-97 357.8 317 61.5
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.6e-96 355.1 291 61.9
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.3e-95 354.0 295 61.4
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.1e-94 349.4 415 49.2
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 4.5e-93 345.5 333 58.0
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.2e-92 343.2 260 66.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 2.1e-87 326.6 280 58.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-86 323.6 234 70.9
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 2.4e-86 323.2 317 57.4
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 7.1e-83 311.6 194 76.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 2.1e-82 310.1 237 62.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.6e-79 300.4 279 54.5
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 4.1e-78 295.8 221 74.2
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.1e-74 283.5 201 66.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-72 276.9 225 67.6
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.2e-71 271.6 226 65.5
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 5.3e-70 268.9 246 60.6
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 5.1e-65 252.3 244 57.8
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 7.0e-62 241.9 238 57.1
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-61 241.1 155 76.1
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.1e-59 234.6 225 61.3
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.9e-59 233.8 225 60.9
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.1e-54 214.9 171 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.0e-53 213.8 244 48.4
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-52 211.5 171 64.9
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.2e-50 204.5 128 78.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-48 196.4 228 50.9
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.0e-45 187.2 124 68.5
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-45 186.4 158 64.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 7.7e-45 185.3 155 65.2
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-44 184.9 155 65.2
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-44 182.6 184 57.6
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-44 182.2 172 59.3
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-43 179.5 155 63.9
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-42 177.6 155 64.5
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-41 174.9 153 63.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-41 172.6 155 61.9
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.6e-40 170.2 185 58.4
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-37 161.4 108 74.1
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-36 155.6 155 58.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-35 154.8 156 56.4
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.1e-34 150.6 104 71.2
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-32 144.8 94 78.7
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.2e-32 144.8 105 68.6
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-32 143.3 107 71.0
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-31 141.0 157 53.5
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-31 141.0 157 53.5
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-31 140.6 127 61.4
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-31 138.7 121 62.0
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 8.3e-31 138.7 227 40.1
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 9.2e-30 135.2 88 69.3
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.8e-26 123.6 75 76.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-24 117.1 139 53.2
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-23 113.6 107 59.8
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-20 104.4 70 77.1
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-19 101.7 133 46.6
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.0e-16 90.9 57 75.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-15 87.8 52 78.8
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-15 85.5 96 52.1
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-14 84.7 89 56.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.0e-08 64.3 139 35.3
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 9.9e-08 62.0 110 37.3
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 7.1e-06 55.8 38 68.4


User provided reference genes

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