Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.4e-89 332.4 202 100.0
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 2.1e-85 319.3 203 97.5
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.1e-85 317.8 203 97.0
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.4e-83 311.6 203 96.6
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 2.2e-82 309.3 202 94.6
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.1e-68 262.3 202 83.2
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 2.8e-61 239.2 208 76.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 3.9e-55 218.8 198 73.2
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.9e-54 216.5 198 73.2
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 3.1e-52 209.1 208 71.6
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 8.9e-52 207.6 199 71.9
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 1.2e-51 207.2 177 78.0
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.0e-51 206.5 181 77.3
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 4.4e-51 205.3 198 72.2
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 4.4e-51 205.3 198 72.2
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 4.4e-51 205.3 204 69.1
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 9.9e-51 204.1 209 68.9
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 1.7e-50 203.4 178 74.7
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 1.7e-50 203.4 197 69.0
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 2.2e-50 203.0 178 74.7
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 6.4e-50 201.4 180 74.4
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 6.4e-50 201.4 165 80.0
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.1e-49 200.7 193 71.0
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.1e-49 200.7 202 69.3
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 1.9e-49 199.9 178 73.6
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.9e-49 199.9 181 74.0
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.4e-49 199.5 186 74.2
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 4.1e-49 198.7 202 68.3
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 5.4e-49 198.4 202 68.3
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 7.1e-49 198.0 180 72.2
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 7.1e-49 198.0 175 75.4
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 9.2e-49 197.6 204 67.6
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 6.0e-48 194.9 181 71.8
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 7.8e-48 194.5 175 75.4
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 1.0e-47 194.1 200 68.5
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.3e-47 193.7 195 68.7
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.7e-47 193.4 197 69.0
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 2.3e-47 193.0 201 68.2
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 2.3e-47 193.0 195 68.7
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 2.3e-47 193.0 195 68.7
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 3.0e-47 192.6 168 75.0
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 5.1e-47 191.8 187 70.1
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 6.6e-47 191.4 194 68.0
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 6.6e-47 191.4 196 66.8
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 6.6e-47 191.4 177 74.0
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 6.6e-47 191.4 208 66.3
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 8.6e-47 191.0 173 74.6
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 1.9e-46 189.9 207 66.2
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 1.9e-46 189.9 198 66.7
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.9e-46 189.9 199 68.3
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 2.5e-46 189.5 156 76.9
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.3e-46 189.1 157 78.3
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 4.3e-46 188.7 203 66.5
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 4.3e-46 188.7 196 66.3
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 5.6e-46 188.3 194 67.0
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 5.6e-46 188.3 194 67.0
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 5.6e-46 188.3 181 72.4
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 5.6e-46 188.3 154 79.9
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 7.3e-46 188.0 181 71.3
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.2e-45 187.2 206 66.0
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.6e-45 186.8 172 70.9
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.6e-45 186.8 166 74.7
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 2.1e-45 186.4 158 75.9
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 2.1e-45 186.4 158 75.9
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 2.1e-45 186.4 158 75.9
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 6.2e-45 184.9 185 69.7
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 6.2e-45 184.9 194 68.0
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 8.1e-45 184.5 158 74.7
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 8.1e-45 184.5 147 82.3
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 8.1e-45 184.5 178 69.1
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 8.1e-45 184.5 165 73.9
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 1.1e-44 184.1 173 72.3
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.1e-44 184.1 201 65.7
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.1e-44 184.1 157 77.1
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.8e-44 183.3 168 73.8
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 3.1e-44 182.6 149 79.9
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 5.2e-44 181.8 173 72.3
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 5.2e-44 181.8 149 79.9
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 5.2e-44 181.8 154 76.6
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 6.8e-44 181.4 198 63.1
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 8.9e-44 181.0 202 65.3
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 8.9e-44 181.0 188 68.1
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 1.2e-43 180.6 195 66.7
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.5e-43 180.3 180 65.6
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.0e-43 179.9 202 62.4
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 2.0e-43 179.9 173 69.9
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.3e-42 177.2 150 78.0
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 3.8e-42 175.6 202 64.4
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 4.9e-42 175.3 148 79.1
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 4.9e-42 175.3 199 64.3
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 8.4e-42 174.5 202 61.9
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 1.1e-41 174.1 157 73.2
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-41 173.7 191 64.4
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 4.2e-41 172.2 161 70.2
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 9.3e-41 171.0 168 66.1
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 9.3e-41 171.0 168 66.1
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.6e-40 170.2 171 69.6
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 2.7e-40 169.5 173 66.5
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 7.8e-40 167.9 167 66.5
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 1.5e-38 163.7 202 61.9
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 7.3e-38 161.4 157 70.7
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 1.3e-37 160.6 185 60.5
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 3.6e-37 159.1 166 68.7
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 3.1e-36 156.0 177 65.0
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 3.1e-36 156.0 197 59.9
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.5e-35 153.7 146 74.7
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 4.9e-34 148.7 203 52.7
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.6e-27 126.3 151 61.6
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 1.4e-25 120.6 157 58.0
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 2.1e-24 116.7 163 58.3
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 6.0e-24 115.2 108 62.0
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 3.3e-22 109.4 150 58.0
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 8.1e-21 104.8 169 53.8
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 2.4e-20 103.2 122 54.9
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 2.2e-18 96.7 140 57.1
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 8.4e-18 94.7 110 59.1
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 1.9e-17 93.6 210 44.3
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.9e-17 93.6 117 60.7
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 3.2e-17 92.8 55 72.7
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.2e-08 64.3 111 48.6
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 5.1e-07 58.9 151 44.4


User provided reference genes

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