Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 7.2e-242 840.5 533 100.0
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.4e-231 804.7 532 92.1
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 6.1e-217 757.7 533 87.8
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 7.7e-212 740.7 556 83.8
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 5.2e-200 701.4 537 86.0
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 9.0e-152 541.2 543 69.1
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.2e-148 530.8 541 73.6
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.4e-146 521.5 544 65.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 4.8e-145 518.8 545 69.4
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 2.2e-142 510.0 538 68.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 8.4e-142 508.1 544 65.4
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.2e-141 505.8 547 65.6
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 4.0e-136 489.2 547 64.2
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.0e-136 489.2 543 65.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.0e-135 486.9 553 64.0
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.5e-135 485.7 536 66.4
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.5e-133 479.9 549 62.7
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 7.1e-133 478.4 537 66.1
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 7.1e-133 478.4 546 65.9
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.2e-132 477.6 560 62.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.5e-132 476.1 546 65.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.6e-132 475.7 546 65.2
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.1e-130 471.1 525 67.4
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 8.2e-129 464.9 541 63.8
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.8e-128 463.8 544 63.1
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 3.1e-128 463.0 547 62.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.2e-127 461.1 547 64.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.2e-127 461.1 542 62.2
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 5.9e-127 458.8 544 61.0
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.3e-126 457.6 546 61.9
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.3e-126 457.6 588 60.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 6.5e-126 455.3 569 62.6
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.9e-125 453.8 531 66.7
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 7.2e-125 451.8 546 61.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 2.3e-123 446.8 544 62.3
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 3.0e-123 446.4 551 63.2
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 6.7e-123 445.3 546 62.6
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 8.8e-123 444.9 547 62.5
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.5e-122 444.1 541 60.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 3.3e-122 443.0 548 60.0
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 5.7e-122 442.2 556 62.9
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 3.4e-119 433.0 557 61.4
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.3e-118 431.0 537 60.9
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.7e-118 430.6 537 61.1
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.2e-118 430.3 548 62.4
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.1e-117 427.9 544 61.0
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.1e-117 427.9 556 57.6
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.9e-117 427.2 545 60.4
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 5.5e-117 425.6 549 57.7
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.6e-116 424.1 547 61.8
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.1e-116 423.7 552 59.4
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.1e-116 423.7 546 59.9
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 3.6e-116 422.9 542 61.3
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.8e-115 420.6 538 65.1
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.8e-115 420.6 542 59.4
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 2.3e-115 420.2 542 58.9
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.0e-114 417.2 549 61.4
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 2.0e-114 417.2 551 61.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-113 414.5 550 59.1
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.7e-113 414.1 551 61.3
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.3e-113 412.1 547 60.9
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.8e-112 410.6 551 59.5
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 2.0e-111 407.1 521 60.8
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.0e-110 404.8 545 56.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.1e-109 401.4 545 62.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.9e-109 400.6 549 57.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 7.2e-109 398.7 552 59.4
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.1e-108 397.1 548 62.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.7e-108 396.7 547 58.3
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.7e-108 396.7 576 51.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 3.6e-108 396.4 555 59.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 8.0e-108 395.2 552 57.8
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-107 394.0 551 56.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 4.8e-105 386.0 542 58.9
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-103 381.3 546 56.0
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.2e-103 381.3 537 59.8
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.0e-103 380.6 552 57.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 3.5e-103 379.8 559 57.8
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 4.5e-103 379.4 551 59.2
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 5.9e-103 379.0 547 60.7
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.9e-101 374.0 548 57.8
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 5.7e-98 362.5 557 55.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.3e-94 351.3 568 51.1
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.9e-94 350.1 466 59.4
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.6e-92 344.4 539 56.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 8.0e-92 342.0 548 56.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.0e-91 340.1 548 55.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 7.5e-90 335.5 546 54.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.3e-89 334.7 549 53.9
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.7e-89 334.3 595 52.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.8e-89 333.6 555 53.9
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 9.1e-88 328.6 560 54.1
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.0e-87 327.4 552 54.9
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.7e-86 324.3 558 52.0
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 5.5e-85 319.3 483 56.7
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 8.0e-84 315.5 543 57.6
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.8e-83 314.3 555 51.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.2e-82 311.6 461 56.4
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.9e-81 307.0 549 49.4
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.8e-80 304.3 550 51.5
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.2e-80 303.5 557 49.6
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.9e-79 299.3 547 48.1
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.3e-78 297.4 562 51.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.2e-76 291.6 555 51.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 8.0e-76 288.9 562 49.6
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.4e-75 288.1 587 48.6
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 4.4e-74 283.1 552 50.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.4e-74 283.1 212 74.5
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 5.8e-74 282.7 575 48.5
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 3.2e-72 276.9 571 48.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.3e-70 271.6 555 49.5
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.3e-70 270.8 180 81.7
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.9e-69 267.7 405 54.8
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.2e-68 265.0 385 50.1
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.0e-67 260.0 182 79.7
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 3.4e-66 256.9 589 43.8
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 7.1e-64 249.2 497 50.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.0e-62 245.4 154 84.4
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.9e-61 241.1 597 45.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.5e-61 238.8 493 50.3
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.0e-54 217.2 178 67.4
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.6e-52 211.5 166 73.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.4e-51 208.4 323 53.6
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 3.5e-47 193.7 389 51.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.6e-44 184.9 451 44.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 4.0e-43 180.3 538 35.1
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.3e-41 175.3 271 51.7
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 8.1e-36 156.0 277 45.8
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 8.1e-28 129.4 128 64.1
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 8.1e-28 129.4 507 40.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 5.8e-26 123.2 110 68.2
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.3e-25 122.1 73 82.2
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 6.5e-25 119.8 81 71.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.6e-23 115.2 136 61.0
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-22 112.5 117 57.3
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 5.1e-22 110.2 103 63.1
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-21 108.2 106 59.4
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.1e-19 100.5 99 63.6
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 6.9e-19 99.8 165 41.8
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.0e-18 98.2 64 82.8
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.0e-17 93.6 103 59.2
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.9e-15 86.3 96 57.3
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.5e-13 81.3 73 67.1
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.5e-13 81.3 73 67.1
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 4.3e-13 80.5 55 85.5
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.8e-11 75.1 86 55.8
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.2e-10 72.4 48 79.2
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.2e-08 63.2 117 47.0
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.3e-06 58.2 156 30.8


User provided reference genes

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