Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.5e-203 712.6 365 100.0
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.7e-202 709.1 365 99.2
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.8e-202 708.0 365 98.9
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.1e-196 686.8 368 95.4
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.5e-195 684.5 369 95.7
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 9.4e-177 623.6 370 87.3
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 3.2e-156 555.4 366 78.1
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 6.6e-154 547.7 362 79.3
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 2.7e-131 472.6 365 70.4
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 2.0e-126 456.4 370 65.1
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.7e-122 443.4 374 65.5
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 4.3e-121 438.7 369 64.2
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 5.6e-121 438.3 370 62.4
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.0e-118 429.9 367 64.0
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 2.6e-118 429.5 369 63.7
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 3.4e-118 429.1 374 62.0
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 4.4e-118 428.7 372 62.9
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 5.8e-118 428.3 370 63.5
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.7e-117 426.8 370 62.4
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 2.2e-117 426.4 369 63.1
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 2.2e-117 426.4 374 61.5
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 2.2e-117 426.4 371 63.1
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 4.9e-117 425.2 377 61.8
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.4e-116 423.7 372 61.0
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.4e-116 423.7 372 62.1
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 7.1e-116 421.4 407 59.5
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 9.3e-116 421.0 368 62.5
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 9.3e-116 421.0 380 61.3
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 3.5e-115 419.1 366 62.3
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 7.9e-115 417.9 368 61.1
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.3e-114 417.2 372 61.6
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 3.0e-114 416.0 369 62.6
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 3.0e-114 416.0 373 60.9
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.9e-114 415.6 373 61.7
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 8.7e-114 414.5 372 62.4
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.1e-113 414.1 371 60.4
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 1.5e-113 413.7 374 61.5
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.9e-113 413.3 373 61.1
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.9e-113 413.3 374 61.0
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 3.3e-113 412.5 369 60.2
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 4.3e-113 412.1 375 60.3
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 4.3e-113 412.1 364 61.5
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.6e-113 411.8 380 60.8
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 7.3e-113 411.4 367 59.9
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 9.6e-113 411.0 371 59.6
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.3e-112 410.6 376 59.8
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.3e-112 410.6 371 60.6
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 8.1e-112 407.9 374 60.4
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 8.1e-112 407.9 371 61.7
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.4e-111 407.1 373 61.4
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 5.3e-111 405.2 363 59.5
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 6.9e-111 404.8 393 57.8
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.0e-111 404.4 369 60.7
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.2e-110 404.1 370 60.5
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.5e-110 403.7 369 60.7
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 2.6e-110 402.9 368 60.9
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 5.8e-110 401.7 381 59.3
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 2.2e-109 399.8 415 54.7
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 2.2e-109 399.8 377 58.4
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.9e-109 399.4 372 58.9
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 4.9e-109 398.7 378 58.7
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 4.9e-109 398.7 379 58.6
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 4.9e-109 398.7 386 58.5
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.1e-108 397.5 402 56.7
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.9e-108 396.7 414 54.6
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.1e-107 393.3 369 59.1
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 4.6e-107 392.1 372 58.9
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-106 391.0 372 59.4
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.3e-106 390.6 373 59.2
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 5.1e-106 388.7 409 56.5
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 5.1e-106 388.7 385 57.9
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 6.7e-106 388.3 391 57.8
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 8.7e-106 387.9 370 58.1
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.9e-105 386.7 391 56.3
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 3.3e-105 386.0 399 56.4
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.3e-104 384.0 401 56.9
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.3e-104 384.0 369 58.5
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.6e-104 383.6 396 57.1
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 3.7e-104 382.5 383 55.6
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 6.2e-104 381.7 387 57.4
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.4e-103 379.8 374 58.3
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 2.4e-103 379.8 388 56.4
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 5.3e-103 378.6 407 54.3
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-102 377.5 406 55.9
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.2e-102 377.5 376 56.9
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.2e-102 377.5 360 57.8
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.0e-102 376.7 390 55.6
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 4.5e-102 375.6 405 55.8
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 5.8e-102 375.2 379 56.5
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.0e-101 374.4 403 56.8
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.2e-101 373.2 379 57.3
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 2.2e-101 373.2 392 54.6
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 2.2e-101 373.2 390 55.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 2.9e-101 372.9 403 55.8
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 4.9e-101 372.1 370 57.3
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 6.5e-101 371.7 349 58.5
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.1e-100 370.9 404 55.9
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.1e-100 370.9 413 55.0
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.2e-100 369.0 370 56.8
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 5.5e-100 368.6 409 54.8
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 3.0e-98 362.8 380 54.7
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.5e-97 360.5 385 54.5
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.2e-94 350.9 387 51.7
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 4.2e-92 342.4 311 57.9
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 6.1e-91 338.6 356 55.6
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 5.3e-87 325.5 399 48.1
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 2.0e-86 323.6 332 55.4
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.9e-84 317.0 376 52.1
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.0e-82 311.2 369 52.8
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.1e-82 308.9 373 49.6
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 4.3e-81 305.8 428 45.8
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 6.5e-69 265.4 277 56.7
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.2e-56 223.8 406 39.2
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 2.2e-56 223.8 354 40.1
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 5.4e-55 219.2 273 48.0
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.9e-52 210.7 487 34.9
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-47 193.7 189 56.6
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-47 193.7 189 56.6
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-47 193.7 189 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.0e-45 186.0 528 30.7
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 9.5e-44 181.8 293 41.0
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.5e-41 174.5 142 66.9
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 8.3e-40 168.7 365 38.4
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.7e-38 163.7 396 32.6
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 2.5e-36 157.1 148 57.4
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 2.8e-35 153.7 167 53.3
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 4.7e-35 152.9 189 49.7
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.1e-34 150.2 142 57.0
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 2.7e-22 110.5 309 30.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.8e-18 97.8 377 28.1
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.8e-18 97.8 377 28.1
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.4e-17 93.6 176 36.9
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.5e-14 83.6 113 45.1
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 4.6e-14 83.2 83 53.0
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-11 74.7 45 75.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 3.2e-07 60.5 77 42.9


User provided reference genes

Program Settings