Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.7e-109 398.3 211 100.0
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.0e-107 392.5 211 98.1
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.9e-106 388.3 209 98.1
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.5e-105 386.3 211 96.7
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 9.5e-105 383.6 211 95.7
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 3.3e-97 358.6 214 91.6
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 3.2e-92 342.0 216 88.0
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 4.3e-81 305.1 211 77.7
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 8.7e-74 280.8 204 74.5
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 5.8e-70 268.1 200 72.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 5.8e-70 268.1 211 69.2
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 5.8e-70 268.1 199 71.4
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 9.9e-70 267.3 207 70.5
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 9.9e-70 267.3 206 72.8
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.8e-69 265.4 199 69.8
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 6.4e-69 264.6 204 72.5
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.4e-68 263.5 199 70.4
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 3.5e-67 258.8 199 70.9
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.6e-67 258.5 211 66.4
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 6.0e-67 258.1 200 68.0
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 6.0e-67 258.1 204 66.7
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.0e-66 257.3 211 66.4
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.0e-66 257.3 211 66.4
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 2.3e-66 256.1 217 66.4
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.0e-66 255.8 204 67.6
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.1e-66 255.0 211 64.9
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 6.6e-66 254.6 199 68.3
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 8.7e-66 254.2 198 67.7
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 1.5e-65 253.4 220 62.7
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 1.9e-65 253.1 206 67.0
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 4.3e-65 251.9 211 66.4
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 7.3e-65 251.1 211 63.5
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 9.6e-65 250.8 208 63.9
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 9.6e-65 250.8 203 66.0
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 9.6e-65 250.8 200 68.0
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 9.6e-65 250.8 210 65.7
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.6e-64 248.8 215 62.8
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 3.6e-64 248.8 213 62.9
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.6e-64 248.8 200 65.5
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 6.2e-64 248.1 200 65.0
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 6.2e-64 248.1 201 67.2
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 6.2e-64 248.1 199 67.8
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 8.1e-64 247.7 206 64.6
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.1e-63 247.3 199 66.3
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 1.8e-63 246.5 200 66.5
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 2.4e-63 246.1 206 64.1
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 2.4e-63 246.1 212 63.2
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 2.4e-63 246.1 219 61.6
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 3.1e-63 245.7 200 66.0
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 5.3e-63 245.0 211 62.6
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 6.9e-63 244.6 211 63.0
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 6.9e-63 244.6 211 63.0
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 6.9e-63 244.6 205 64.9
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 6.9e-63 244.6 210 63.8
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 9.0e-63 244.2 211 62.6
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 9.0e-63 244.2 207 64.7
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.2e-62 243.8 219 60.7
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.2e-62 243.8 219 60.7
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 1.2e-62 243.8 215 62.3
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 1.2e-62 243.8 207 64.7
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.5e-62 243.4 200 64.0
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.5e-62 243.4 206 63.6
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.0e-62 243.0 211 63.0
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 2.0e-62 243.0 199 64.8
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.3e-61 240.4 212 62.7
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.3e-61 240.4 215 60.9
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.7e-61 240.0 199 63.8
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 1.7e-61 240.0 205 63.9
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 2.9e-61 239.2 208 60.6
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 2.9e-61 239.2 202 63.9
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.8e-61 238.8 204 65.2
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 8.4e-61 237.7 211 62.1
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 1.1e-60 237.3 199 62.3
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 1.1e-60 237.3 205 62.9
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 1.9e-60 236.5 207 63.3
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 1.9e-60 236.5 206 65.0
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.4e-60 236.1 201 64.7
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 5.4e-60 235.0 208 63.9
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 7.1e-60 234.6 236 57.6
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 1.2e-59 233.8 201 62.7
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 3.5e-59 232.3 201 62.7
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 6.0e-59 231.5 199 61.8
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 6.0e-59 231.5 212 59.9
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.3e-58 230.3 139 88.5
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.3e-58 229.6 191 63.4
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 6.7e-58 228.0 198 61.6
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 6.7e-58 228.0 199 62.8
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.9e-57 226.5 199 60.3
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 5.6e-57 224.9 196 62.2
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.3e-56 223.8 207 60.9
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 1.6e-56 223.4 211 57.3
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 8.1e-56 221.1 207 59.4
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 1.8e-55 219.9 214 54.7
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 9.0e-55 217.6 205 58.5
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-54 216.5 154 70.1
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-54 216.5 154 70.1
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 2.6e-54 216.1 209 56.0
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 2.6e-54 216.1 205 57.6
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 4.5e-54 215.3 201 60.2
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 1.1e-52 210.7 161 68.9
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.4e-52 210.3 166 63.9
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.7e-51 206.1 213 57.3
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 3.9e-50 202.2 187 56.1
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 8.7e-50 201.1 157 66.2
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 9.0e-47 191.0 362 37.3
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 2.6e-46 189.5 155 62.6
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.7e-45 186.8 141 71.6
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 9.7e-41 171.0 189 51.9
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 2.8e-40 169.5 156 57.1
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 8.5e-37 157.9 117 70.9
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 3.2e-36 156.0 117 70.1
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 4.2e-36 155.6 179 50.3
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.4e-34 150.6 127 63.0
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 6.7e-34 148.3 183 45.4
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 1.5e-33 147.1 123 65.0
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 1.5e-33 147.1 115 68.7
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 3.3e-33 146.0 127 60.6
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.2e-30 137.5 121 59.5
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.4e-30 136.0 74 97.3
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 3.9e-26 122.5 103 62.1
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 6.3e-24 115.2 198 35.4
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 4.5e-22 109.0 182 41.8
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 5.0e-21 105.5 87 63.2
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 4.2e-20 102.4 127 48.0
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.8e-16 89.7 69 66.7
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 8.2e-16 88.2 88 52.3
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 3.1e-15 86.3 187 30.5
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 4.1e-15 85.9 48 89.6
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 4.1e-15 85.9 74 63.5
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 5.9e-14 82.0 55 70.9
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.2e-12 75.1 47 80.9


User provided reference genes

Program Settings