Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.4e-199 696.8 349 100.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.6e-195 684.1 349 98.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-180 636.3 349 94.0
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-176 622.9 349 92.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-175 619.8 349 92.3
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.6e-170 602.8 345 89.9
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 6.1e-157 557.8 335 83.0
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 3.9e-156 555.1 335 83.0
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.2e-154 549.3 347 78.7
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.2e-154 549.3 345 79.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.8e-153 546.2 347 78.4
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 3.1e-153 545.4 333 81.4
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.1e-153 545.0 347 78.4
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.2e-152 543.5 345 78.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.6e-152 542.3 343 79.0
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.3e-151 540.0 347 78.4
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 5.0e-151 538.1 347 78.1
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.1e-150 537.0 332 79.8
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 5.5e-150 534.6 347 78.4
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.2e-149 533.5 347 78.4
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.6e-149 533.1 343 78.1
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.6e-149 533.1 333 79.3
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.6e-149 533.1 332 79.8
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.1e-149 531.2 345 77.4
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.4e-148 530.0 345 77.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.3e-148 529.3 333 78.7
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 3.9e-148 528.5 333 79.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 5.2e-148 528.1 345 77.4
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 6.7e-148 527.7 347 76.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 6.7e-148 527.7 348 77.3
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 6.7e-148 527.7 348 76.4
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.7e-148 527.7 347 76.4
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 6.7e-148 527.7 335 77.9
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.5e-147 526.6 333 78.4
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.4e-147 525.0 351 74.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.2e-146 522.7 332 76.2
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.1e-145 520.4 330 77.9
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.4e-145 520.0 335 77.0
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.8e-145 519.6 351 74.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 3.1e-145 518.8 343 77.0
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 4.1e-145 518.5 353 74.5
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.3e-145 518.1 383 70.5
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 7.0e-145 517.7 348 74.1
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.2e-144 516.9 345 75.1
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.2e-144 516.9 348 73.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.5e-144 515.4 345 74.8
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 5.9e-144 514.6 347 74.4
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 7.7e-144 514.2 345 74.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 7.7e-144 514.2 384 68.2
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.3e-143 513.5 345 74.8
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.7e-143 513.1 335 76.1
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.2e-143 512.7 350 74.6
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.2e-143 512.7 346 72.8
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 3.8e-143 511.9 351 74.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 5.0e-143 511.5 345 73.9
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 5.0e-143 511.5 348 75.0
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 6.5e-143 511.1 335 76.7
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.5e-142 510.0 335 75.5
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.9e-142 509.6 341 73.9
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 7.2e-142 507.7 350 73.7
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 7.2e-142 507.7 350 73.7
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 7.2e-142 507.7 333 76.3
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-141 506.5 352 74.1
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.6e-141 506.5 350 73.4
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.1e-141 506.1 334 74.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.6e-141 505.4 349 72.8
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.1e-141 504.6 349 73.6
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.4e-140 503.4 340 74.4
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.4e-140 503.4 352 73.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 3.0e-140 502.3 411 65.7
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 3.0e-140 502.3 347 71.5
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 6.7e-140 501.1 332 75.0
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.7e-140 501.1 386 67.9
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 8.8e-140 500.7 336 74.7
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.6e-139 499.2 347 73.2
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 5.7e-139 498.0 345 72.5
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.3e-138 496.9 387 66.4
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.2e-138 496.1 332 73.8
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.2e-138 496.1 334 71.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.8e-138 495.7 347 71.8
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 3.7e-138 495.4 351 72.4
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 8.2e-138 494.2 347 71.5
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.8e-137 493.0 349 72.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 3.1e-137 492.3 345 71.9
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 7.0e-137 491.1 347 73.2
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-136 490.0 336 74.4
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-136 490.0 336 74.4
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.0e-135 487.3 318 77.4
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.3e-132 476.1 336 73.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.2e-131 473.8 354 67.8
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.4e-129 464.9 349 68.8
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 5.0e-127 458.4 351 69.5
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.1e-126 457.2 348 66.4
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.8e-125 452.6 337 67.1
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.6e-123 446.0 334 66.8
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 6.3e-122 441.4 337 65.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.9e-118 429.9 261 80.1
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.2e-117 427.2 263 79.8
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 5.2e-116 421.8 343 62.7
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.7e-114 416.8 351 60.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 4.9e-114 415.2 260 79.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 4.9e-114 415.2 256 79.3
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 4.1e-113 412.1 261 77.0
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.1e-108 396.0 341 60.1
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-103 380.2 382 56.8
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.3e-103 379.8 346 61.3
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.9e-103 379.0 331 61.0
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 8.6e-103 377.9 255 72.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 8.1e-101 371.3 324 59.9
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 8.6e-87 324.7 329 52.9
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 7.3e-86 321.6 209 75.1
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.6e-79 298.5 246 63.0
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.1e-68 263.1 343 44.3
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 5.3e-68 262.3 220 64.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 3.5e-64 249.6 138 86.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.3e-63 246.9 219 59.4
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.9e-62 243.8 278 46.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.9e-62 243.8 134 83.6
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-58 230.3 136 91.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.9e-58 229.9 134 92.5
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 8.4e-58 228.4 134 91.8
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.4e-57 227.6 127 82.7
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 4.2e-57 226.1 325 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 3.3e-54 216.5 190 58.4
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.7e-54 215.7 128 91.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.7e-54 215.7 128 91.4
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 2.8e-53 213.4 125 90.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 6.3e-53 212.2 128 89.8
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.2e-37 160.6 109 75.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.8e-37 159.5 101 87.1
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 2.4e-36 157.1 107 71.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-30 137.9 161 46.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-27 127.5 213 41.8
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.5e-25 121.3 73 82.2
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 8.8e-23 112.1 78 67.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.0e-18 98.6 80 63.8
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.9e-17 94.4 74 68.9
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 4.0e-15 86.7 66 71.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 8.8e-15 85.5 151 39.1
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 8.8e-15 85.5 68 61.8
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.4e-12 78.2 86 50.0
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 5.9e-11 72.8 64 59.4
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.0e-10 72.0 51 72.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.3e-10 71.6 52 65.4
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 1.9e-09 67.8 93 45.2
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 4.4e-06 56.6 54 53.7


User provided reference genes

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