Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.1e-181 637.9 307 100.0
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-148 530.0 269 95.9
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-140 501.9 267 92.1
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.1e-74 284.3 147 92.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.3e-66 256.1 337 46.6
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.0e-62 244.6 263 53.6
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-45 187.6 198 52.0
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.2e-45 186.0 257 42.8
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 6.7e-43 178.7 200 50.5
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.2e-42 177.9 203 50.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-39 167.5 198 48.0
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.8e-38 162.9 270 39.6
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.2e-36 157.9 290 38.3
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.8e-35 152.1 200 45.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 9.8e-34 148.3 204 44.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-32 144.8 202 42.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.8e-32 144.1 267 36.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.1e-32 143.3 177 47.5
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 3.1e-32 143.3 173 46.2
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.1e-32 143.3 180 47.2
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 5.4e-32 142.5 188 42.6
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.6e-31 141.0 177 46.3
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.6e-31 141.0 177 46.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.6e-31 141.0 177 46.3
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.6e-31 141.0 180 46.1
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.0e-31 140.6 177 46.3
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.7e-31 140.2 173 46.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.5e-31 139.8 193 44.6
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.5e-31 139.4 178 42.7
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.5e-31 139.4 178 43.8
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 7.7e-31 138.7 175 45.1
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 7.7e-31 138.7 202 40.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.3e-30 137.9 171 43.9
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-30 137.9 200 43.0
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.2e-30 137.1 172 44.8
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.9e-30 136.7 187 41.7
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.9e-30 136.7 182 42.9
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.9e-30 136.7 179 44.7
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.9e-30 136.7 185 44.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.8e-30 136.3 175 45.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.8e-30 136.3 177 42.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.0e-30 136.0 186 41.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.0e-30 136.0 171 45.0
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.0e-30 136.0 171 45.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.0e-30 136.0 175 44.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 5.0e-30 136.0 189 42.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 5.0e-30 136.0 211 41.2
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 6.5e-30 135.6 171 43.9
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 6.5e-30 135.6 171 43.9
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 6.5e-30 135.6 171 44.4
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 8.5e-30 135.2 206 39.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.5e-30 135.2 180 43.3
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.1e-29 134.8 176 43.2
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.9e-29 134.0 209 41.6
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.9e-29 134.0 173 42.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.5e-29 133.7 178 41.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 3.2e-29 133.3 192 42.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 3.2e-29 133.3 173 42.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.2e-29 132.9 180 41.1
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 4.2e-29 132.9 176 44.9
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 5.5e-29 132.5 198 38.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.5e-29 132.5 181 42.0
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.5e-29 132.5 182 42.3
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.2e-29 132.1 171 43.9
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.2e-29 132.1 171 42.7
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 7.2e-29 132.1 178 42.7
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 9.5e-29 131.7 171 42.1
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.2e-28 131.3 186 41.4
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.2e-28 131.3 180 43.3
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.6e-28 131.0 194 40.7
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.6e-28 131.0 177 44.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.1e-28 130.6 173 41.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.8e-28 130.2 172 44.2
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.6e-28 129.8 171 42.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 4.7e-28 129.4 176 43.8
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.7e-28 129.4 171 43.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.7e-28 129.4 171 43.3
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 6.1e-28 129.0 172 44.2
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.1e-28 129.0 171 42.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.0e-27 128.3 178 42.1
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-27 128.3 200 38.0
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.0e-27 128.3 201 40.3
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.4e-27 127.9 171 44.4
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.4e-27 127.9 175 42.3
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.4e-27 127.9 207 38.2
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.4e-27 127.9 171 42.7
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.4e-27 127.9 171 41.5
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.8e-27 127.5 172 42.4
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.3e-27 127.1 191 41.4
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.0e-27 126.7 171 41.5
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.0e-27 126.3 173 42.8
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 4.0e-27 126.3 180 40.6
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.0e-27 126.3 200 38.0
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.2e-27 125.9 175 40.0
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 5.2e-27 125.9 182 39.0
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 6.8e-27 125.6 177 39.0
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 6.8e-27 125.6 182 38.5
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 6.8e-27 125.6 171 41.5
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 8.8e-27 125.2 172 41.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.8e-27 125.2 171 41.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.5e-26 124.4 171 42.7
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.6e-26 123.6 184 39.1
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.6e-26 123.6 205 40.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.3e-25 121.3 191 40.3
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 4.9e-25 119.4 239 33.5
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.4e-24 117.9 171 42.1
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.1e-24 116.3 175 38.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.2e-23 114.8 175 38.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.1e-21 108.2 143 42.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.9e-21 107.5 147 42.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 9.5e-21 105.1 177 36.2
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 3.6e-20 103.2 200 32.5
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.0e-20 102.1 162 40.7
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.0e-19 101.7 183 35.5
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 2.3e-19 100.5 139 43.9
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.0e-19 99.8 133 41.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 5.2e-19 99.4 162 36.4
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.9e-19 98.6 117 41.9
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.2e-18 98.2 153 40.5
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 7.5e-18 95.5 90 53.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.2e-17 94.0 175 35.4
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 3.7e-17 93.2 303 29.0
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.8e-16 90.9 79 57.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.8e-16 90.9 139 37.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 5.6e-13 79.3 181 32.0
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 9.5e-13 78.6 77 51.9
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 7.5e-10 68.9 63 50.8
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 9.8e-10 68.6 63 47.6
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.9e-09 67.0 135 31.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.9e-08 64.3 117 33.3
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 2.0e-07 60.8 51 56.9


User provided reference genes

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