Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 3.6e-124 448.4 241 100.0
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 2.0e-106 389.4 225 94.2
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 7.3e-101 370.9 210 95.2
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 3.6e-100 368.6 207 94.2
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.0e-95 351.3 222 86.9
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 7.3e-93 344.4 209 86.6
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.8e-91 337.8 251 77.7
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 4.8e-68 261.9 207 68.6
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 1.1e-67 260.8 208 67.3
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 4.0e-67 258.8 207 67.1
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 1.3e-65 253.8 205 62.0
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 4.3e-61 238.8 200 63.0
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 1.6e-60 236.9 207 60.9
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 6.2e-60 235.0 205 62.0
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 8.1e-60 234.6 220 56.4
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 8.1e-60 234.6 204 63.2
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 1.8e-59 233.4 207 59.4
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 2.4e-59 233.0 204 60.8
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 4.0e-59 232.3 207 58.5
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 1.5e-58 230.3 207 58.9
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 6.7e-54 214.9 199 58.3
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 8.7e-54 214.5 205 57.1
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 1.5e-53 213.8 204 55.4
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 5.6e-53 211.8 207 55.1
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 1.3e-52 210.7 200 56.5
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 2.1e-52 209.9 207 54.6
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 1.8e-51 206.8 200 54.5
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 1.2e-50 204.1 172 61.6
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 3.2e-48 196.1 204 53.4
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 5.5e-48 195.3 172 60.5
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 1.6e-47 193.7 177 59.3
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 1.6e-47 193.7 172 59.9
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 1.6e-47 193.7 172 59.9
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 2.1e-47 193.4 207 51.7
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 4.6e-47 192.2 172 59.3
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.8e-46 190.3 204 52.0
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 2.3e-46 189.9 201 52.7
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 6.7e-46 188.3 176 58.0
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 6.7e-46 188.3 204 51.5
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 1.3e-44 184.1 201 50.7
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 8.2e-44 181.4 204 50.0
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 8.2e-44 181.4 172 58.1
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 1.8e-43 180.3 201 51.2
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 3.1e-43 179.5 169 56.2
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 3.1e-43 179.5 178 55.1
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 4.1e-43 179.1 207 48.8
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 6.9e-43 178.3 169 55.6
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 7.6e-42 174.9 169 55.6
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 1.3e-41 174.1 203 51.2
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 2.9e-41 172.9 178 51.7
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 2.5e-40 169.9 169 53.3
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 4.2e-40 169.1 172 51.7
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 7.2e-40 168.3 197 50.3
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 3.6e-39 166.0 211 46.9
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 2.3e-38 163.3 172 52.3
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 2.3e-38 163.3 204 47.5
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 6.7e-38 161.8 236 43.2
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 9.0e-35 151.4 207 45.9
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 2.6e-34 149.8 181 48.6
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 1.0e-33 147.9 180 47.2
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 2.9e-33 146.4 169 48.5
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 4.2e-32 142.5 169 47.9
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 7.2e-32 141.7 169 47.3
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 7.2e-32 141.7 169 47.3
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 1.2e-31 141.0 169 46.2
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 3.6e-31 139.4 169 46.2
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 3.6e-31 139.4 169 46.2
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 3.6e-31 139.4 169 46.2
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.9e-30 136.0 169 45.6
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 1.5e-29 134.0 203 43.3
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 1.7e-28 130.6 169 45.6
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 6.9e-27 125.2 110 65.5
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 1.7e-25 120.6 110 58.2
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 2.2e-25 120.2 106 62.3
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 2.5e-24 116.7 286 32.2
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 9.4e-24 114.8 130 46.9
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 2.1e-23 113.6 77 75.3
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 2.1e-23 113.6 77 75.3
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 2.7e-23 113.2 200 40.5
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 8.2e-20 101.7 108 52.8
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 8.2e-20 101.7 93 51.6
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 8.2e-20 101.7 93 51.6
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 5.3e-19 99.0 74 71.6
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 7.7e-18 95.1 105 48.6
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 1.1e-16 91.3 58 79.3
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 8.8e-14 81.6 107 47.7
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 4.8e-12 75.9 94 46.8
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 6.3e-12 75.5 137 35.8


User provided reference genes

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