Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1201.8 652 100.0
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1154.8 656 94.4
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 0.0e+00 1151.7 656 95.9
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1151.3 652 94.5
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 0.0e+00 1132.5 656 94.5
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.3e-240 836.6 537 85.3
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 8.3e-200 701.0 576 68.2
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 7.5e-185 651.4 589 67.1
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 1.6e-166 590.5 656 56.4
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.7e-160 570.5 638 55.5
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 4.9e-152 542.3 666 52.4
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.5e-151 538.9 664 52.1
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 7.1e-151 538.5 692 52.2
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.3e-148 529.6 687 49.2
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.1e-143 514.6 671 49.2
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 7.1e-143 511.9 662 50.9
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.2e-142 511.1 643 51.3
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 5.1e-141 505.8 646 52.2
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.5e-140 504.2 693 48.2
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.4e-137 493.0 685 49.8
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 4.5e-137 492.7 587 52.1
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.0e-136 491.5 656 52.0
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.7e-136 490.7 680 49.3
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 2.2e-136 490.3 668 48.8
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.1e-135 488.0 668 50.3
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.9e-135 487.3 687 49.6
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 9.3e-135 485.0 652 49.7
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 2.1e-134 483.8 634 51.9
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.9e-133 479.6 676 48.5
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 7.4e-132 475.3 578 52.1
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 9.7e-132 474.9 711 48.0
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.2e-131 473.8 648 51.1
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.4e-130 470.3 624 47.9
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.2e-129 468.0 578 51.6
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 2.0e-129 467.2 694 48.1
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.9e-129 465.7 643 47.4
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 7.7e-129 465.3 687 46.4
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.3e-128 464.5 675 47.1
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 3.8e-128 463.0 658 47.4
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 7.2e-127 458.8 643 47.0
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 8.8e-125 451.8 669 45.7
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 3.3e-124 449.9 683 44.8
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.8e-123 446.8 684 44.7
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 5.3e-122 442.6 681 44.3
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.6e-121 440.3 620 45.5
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 1.2e-118 431.4 626 45.7
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.3e-117 427.2 710 43.1
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.4e-114 417.9 699 43.2
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 2.6e-113 413.7 665 45.0
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.5e-108 397.9 441 55.3
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 8.2e-107 392.1 616 44.0
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 2.1e-102 377.5 444 52.0
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.8e-101 374.4 436 51.1
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 3.8e-96 356.7 483 50.3
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.5e-95 354.8 610 42.0
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.7e-91 341.3 309 63.4
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 8.6e-88 328.9 561 41.7
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.6e-81 308.1 477 44.2
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.2e-78 296.2 289 56.1
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 1.4e-77 295.0 470 44.7
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 3.7e-75 287.0 433 47.3
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 7.8e-73 279.3 635 34.8
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 5.0e-72 276.6 286 58.0
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.6e-70 271.6 631 36.6
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.0e-68 264.6 280 55.4
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 1.4e-66 258.5 664 38.1
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.9e-56 223.8 235 51.9
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 4.7e-54 216.9 219 57.5
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 6.0e-49 199.9 247 46.2
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 2.3e-48 198.0 390 40.5
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 9.0e-45 186.0 403 38.7
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 7.4e-39 166.4 256 46.9
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 2.6e-36 157.9 409 31.3
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 1.3e-35 155.6 173 46.8
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.3e-32 145.6 317 33.1
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 5.6e-31 140.2 237 37.6
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.0e-29 132.9 234 33.3
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.6e-28 129.8 300 29.7
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.6e-28 129.8 300 29.7
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-25 122.1 238 32.8
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.6e-25 120.6 235 32.3
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 8.7e-24 116.3 507 29.4
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 5.7e-23 113.6 308 30.2
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.4e-21 109.0 296 29.4
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 3.4e-20 104.4 477 28.7
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 3.8e-19 100.9 160 48.1
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 6.5e-19 100.1 234 31.6
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 1.1e-15 89.4 127 45.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.2e-12 79.3 239 25.9
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 2.0e-12 78.6 256 25.4
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.6e-12 78.2 274 26.6
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 4.5e-12 77.4 274 24.8
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 7.7e-12 76.6 313 25.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.3e-11 75.9 266 26.3
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.7e-11 75.5 313 25.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 2.2e-11 75.1 275 24.7
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 5.0e-11 73.9 278 24.8
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 5.0e-11 73.9 266 25.6
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 8.5e-11 73.2 126 38.1
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.1e-10 72.8 313 24.6
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.4e-10 72.4 252 26.6
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.4e-10 72.4 266 23.7
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 1.4e-10 72.4 301 23.6
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 3.2e-10 71.2 246 25.6
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 4.2e-10 70.9 316 23.7
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 3.6e-09 67.8 266 24.1
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 3.6e-09 67.8 231 26.4
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 4.6e-09 67.4 217 23.0
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 6.1e-09 67.0 272 26.5
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 6.1e-09 67.0 231 26.8
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 7.9e-09 66.6 299 24.1
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 7.9e-09 66.6 246 28.0
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 7.9e-09 66.6 313 24.6
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.0e-08 66.2 244 25.8
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.0e-08 66.2 328 24.1
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.8e-08 65.5 190 30.5
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.8e-08 65.5 313 24.3
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.8e-08 65.5 423 23.4
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.3e-08 65.1 238 23.9
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.3e-08 65.1 212 24.1
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 3.0e-08 64.7 282 24.5
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 3.9e-08 64.3 271 26.2
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 5.1e-08 63.9 308 25.0
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 5.1e-08 63.9 213 28.2
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 6.7e-08 63.5 193 26.4
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 6.7e-08 63.5 237 22.8
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 1.5e-07 62.4 276 24.3
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 2.6e-07 61.6 347 23.1
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 2.6e-07 61.6 103 42.7
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 2.6e-07 61.6 312 23.1
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 3.3e-07 61.2 238 23.5
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 9.7e-07 59.7 264 23.9
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.7e-06 58.9 274 24.1
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.7e-06 58.9 290 22.1
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.2e-06 58.5 264 23.9
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.2e-06 58.5 314 22.3
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.2e-06 58.5 314 22.3
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.8e-06 58.2 221 24.0
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 4.8e-06 57.4 242 24.4
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 6.3e-06 57.0 303 23.1
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 8.2e-06 56.6 327 23.2


User provided reference genes

Program Settings