Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 0.0e+00 1115.9 552 100.0
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 0.0e+00 1095.5 552 98.4
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 0.0e+00 1092.8 552 98.4
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 0.0e+00 1088.6 552 97.1
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.0e-307 1057.7 566 93.5
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 3.1e-288 994.6 553 89.0
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 3.9e-267 924.5 553 81.2
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.3e-254 882.9 553 78.1
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.8e-243 845.9 549 75.4
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 2.6e-234 815.5 552 73.6
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 4.4e-234 814.7 552 72.5
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.8e-232 809.3 548 72.8
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.1e-232 808.5 553 72.5
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 9.1e-232 807.0 552 71.7
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.5e-229 799.7 512 74.6
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 9.4e-229 797.0 519 74.4
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 1.1e-226 790.0 525 72.0
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.5e-226 789.6 513 73.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 4.8e-225 784.6 552 71.9
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 8.2e-225 783.9 547 70.9
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 3.1e-224 781.9 557 68.0
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 9.1e-224 780.4 552 68.7
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.2e-223 780.0 540 69.6
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 3.5e-223 778.5 561 69.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 7.7e-223 777.3 549 67.8
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.0e-222 776.9 525 73.3
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 1.0e-222 776.9 552 68.3
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 6.5e-222 774.2 549 68.1
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 1.9e-221 772.7 552 68.1
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 3.2e-221 771.9 548 69.7
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 9.4e-221 770.4 549 68.3
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 9.4e-221 770.4 507 72.2
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 8.0e-220 767.3 548 67.5
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 8.0e-220 767.3 550 67.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.4e-219 766.5 509 69.2
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.8e-219 766.1 550 67.5
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 2.3e-219 765.8 522 70.3
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 6.8e-219 764.2 539 68.5
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.5e-218 763.1 546 68.5
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 3.4e-218 761.9 549 65.8
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 4.4e-218 761.5 518 71.8
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 4.4e-218 761.5 549 68.1
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 7.5e-218 760.8 539 69.0
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 9.8e-218 760.4 549 66.7
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 9.8e-218 760.4 506 71.5
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.3e-217 760.0 544 69.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 2.2e-217 759.2 529 71.1
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 2.2e-217 759.2 513 69.2
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 6.3e-217 757.7 547 68.2
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.1e-216 756.9 516 69.4
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.8e-216 756.1 546 67.6
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 4.1e-216 755.0 538 66.7
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 9.1e-216 753.8 511 71.2
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 4.5e-215 751.5 564 66.0
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 5.9e-215 751.1 538 67.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.3e-214 750.0 509 70.5
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.8e-214 748.4 544 67.1
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 4.2e-213 745.0 548 65.5
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.6e-212 741.9 520 68.7
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.6e-212 741.9 510 71.2
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.0e-211 740.3 546 66.7
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-211 740.0 510 71.2
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 1.4e-211 740.0 551 65.9
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 2.3e-211 739.2 494 72.1
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-211 738.8 510 71.0
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 4.0e-211 738.4 514 68.7
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 4.4e-210 734.9 515 68.9
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 2.2e-209 732.6 515 68.0
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.8e-209 732.3 512 69.3
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 4.9e-209 731.5 533 69.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 2.7e-207 725.7 523 67.9
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.9e-207 724.5 511 68.9
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.0e-206 723.8 521 67.8
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.7e-206 723.0 519 68.2
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 5.0e-206 721.5 547 65.4
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 1.1e-205 720.3 553 64.0
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.5e-205 719.9 520 67.9
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 2.3e-203 712.6 498 70.1
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.5e-202 709.9 552 64.7
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 3.4e-202 708.8 493 69.2
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 4.3e-197 691.8 490 66.9
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 5.6e-197 691.4 471 68.6
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 4.7e-196 688.3 489 68.3
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 1.8e-195 686.4 550 61.3
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.5e-194 683.3 469 70.4
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 4.9e-193 678.3 432 76.6
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 5.0e-190 668.3 526 62.5
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.7e-185 652.1 487 72.7
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 6.0e-183 644.8 559 58.3
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 3.4e-178 629.0 576 54.7
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 6.6e-174 614.8 425 70.4
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.8e-172 609.4 552 56.5
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 9.9e-170 600.9 501 58.9
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 6.4e-169 598.2 435 65.7
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.3e-166 590.5 381 72.2
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.3e-166 589.7 541 54.0
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.5e-165 587.0 379 74.4
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.5e-165 587.0 391 71.4
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.8e-164 582.8 432 67.1
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 7.9e-159 564.7 486 56.4
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.0e-158 562.8 576 49.8
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.0e-158 562.8 576 49.8
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 1.8e-155 553.5 383 71.3
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 2.7e-151 539.7 446 59.4
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 1.8e-147 526.9 446 61.4
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.2e-143 514.2 405 63.0
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.2e-143 514.2 353 69.7
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 7.4e-141 505.0 552 51.6
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 1.3e-134 484.2 539 52.5
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 2.4e-131 473.4 500 50.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 2.8e-124 449.9 285 75.1
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.4e-86 324.7 464 39.9
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 6.6e-81 305.8 219 69.4
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-75 287.7 238 60.5
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 2.3e-65 254.2 189 65.6
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.2e-58 231.9 201 58.7
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 9.9e-53 212.2 154 68.8
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.0e-49 202.2 196 55.1
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 4.8e-47 193.4 125 68.0
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 4.0e-46 190.3 129 66.7
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 6.4e-44 183.0 144 63.2
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.4e-44 182.6 116 70.7
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 7.9e-42 176.0 499 29.1
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.2e-35 154.1 90 77.8
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.4e-30 138.7 140 54.3
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 107 58.9
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 107 58.9
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 107 58.9
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.5e-26 124.0 86 68.6
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.8e-23 114.4 76 71.1
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.4e-22 111.3 81 64.2
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 5.0e-12 77.0 299 28.8
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 4.2e-11 73.9 76 50.0
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 6.7e-09 66.6 222 29.3
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 3.3e-08 64.3 283 23.3
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 7.4e-08 63.2 232 29.7
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 1.7e-07 62.0 230 28.3
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.7e-07 62.0 190 31.1
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 2.2e-07 61.6 116 31.0
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 2.8e-07 61.2 233 27.9
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 2.8e-07 61.2 226 28.8
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 3.7e-07 60.8 234 28.2
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.8e-07 60.5 229 28.8
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 4.8e-07 60.5 234 27.8
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 4.8e-07 60.5 233 27.0
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 6.3e-07 60.1 222 27.9
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 8.2e-07 59.7 242 26.9
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.1e-06 59.3 230 26.5
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 1.4e-06 58.9 229 27.5
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 1.4e-06 58.9 230 26.5
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 1.4e-06 58.9 221 28.1
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.8e-06 58.5 222 28.4
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 3.1e-06 57.8 228 24.6
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.1e-06 57.8 283 26.1
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 5.3e-06 57.0 325 25.5
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 5.3e-06 57.0 291 25.4
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 6.9e-06 56.6 325 25.5
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 6.9e-06 56.6 325 25.5
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 9.1e-06 56.2 234 27.8


User provided reference genes

Program Settings