Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.9e-79 298.9 202 100.0
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 6.6e-79 297.7 202 99.5
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 6.6e-79 297.7 202 99.5
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 3.6e-69 265.4 200 94.0
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 4.7e-69 265.0 202 93.1
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 6.4e-66 254.6 204 88.7
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 1.7e-50 203.4 206 79.1
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 3.2e-49 199.1 206 79.1
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 8.7e-39 164.5 206 56.3
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 1.5e-38 163.7 191 53.9
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 4.9e-34 148.7 201 51.7
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 7.1e-33 144.8 202 52.5
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 4.6e-32 142.1 211 45.5
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 6.0e-32 141.7 198 65.7
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.3e-31 140.6 204 54.9
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.7e-31 140.2 202 58.9
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 2.3e-31 139.8 203 46.3
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 5.1e-31 138.7 198 64.6
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 1.9e-30 136.7 210 44.8
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 2.5e-30 136.3 194 47.4
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.6e-29 133.7 210 43.8
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 4.8e-29 132.1 210 43.3
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 6.2e-29 131.7 198 46.0
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 2.4e-28 129.8 203 50.7
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 5.3e-28 128.6 207 43.0
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.2e-27 127.5 203 46.3
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 5.8e-27 125.2 204 54.9
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 5.8e-27 125.2 203 45.3
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 7.6e-27 124.8 212 43.4
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 9.9e-27 124.4 208 43.3
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 2.9e-26 122.9 202 53.5
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 3.8e-26 122.5 210 41.0
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 3.8e-26 122.5 213 44.6
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 8.4e-26 121.3 203 42.9
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 1.4e-25 120.6 211 43.6
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 5.4e-25 118.6 208 61.5
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 9.3e-25 117.9 202 46.5
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 9.3e-25 117.9 199 49.7
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 1.3e-23 114.0 195 44.1
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 8.7e-23 111.3 206 42.7
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 8.7e-23 111.3 151 58.9
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 2.5e-22 109.8 212 46.2
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 4.3e-22 109.0 192 44.8
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 7.4e-22 108.2 205 35.1
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 1.3e-21 107.5 155 65.2
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 1.6e-21 107.1 205 40.5
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 1.6e-21 107.1 205 40.5
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 2.8e-21 106.3 205 36.6
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 2.8e-21 106.3 204 42.6
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 3.7e-21 105.9 202 42.6
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 6.2e-21 105.1 207 43.0
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 6.2e-21 105.1 196 37.8
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 1.1e-20 104.4 203 36.0
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 1.8e-20 103.6 202 43.1
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 2.4e-20 103.2 211 49.8
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 2.4e-20 103.2 204 36.8
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 4.0e-20 102.4 210 49.5
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 4.0e-20 102.4 72 68.1
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 5.3e-20 102.1 76 69.7
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.2e-19 100.9 203 38.4
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 2.0e-19 100.1 207 37.2
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 2.6e-19 99.8 186 54.3
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 2.6e-19 99.8 207 41.5
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 3.4e-19 99.4 208 42.3
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 3.4e-19 99.4 191 47.1
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 5.8e-19 98.6 207 41.5
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 5.8e-19 98.6 210 43.8
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 7.6e-19 98.2 150 60.0
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 1.0e-18 97.8 174 42.5
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 1.0e-18 97.8 203 47.8
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 4.9e-18 95.5 210 45.2
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 4.9e-18 95.5 76 64.5
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 5.5e-17 92.0 73 61.6
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 7.1e-17 91.7 204 39.2
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 1.6e-16 90.5 219 40.2
Dinv29715 Davidia involucrata HOM05D007152 ORTHO05D008912 2.7e-16 89.7 162 63.6
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 4.6e-16 89.0 204 39.2
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 4.6e-16 89.0 204 39.2
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 4.6e-16 89.0 155 47.7
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 4.6e-16 89.0 161 42.9
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 1.0e-15 87.8 62 69.4
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 1.0e-15 87.8 73 54.8
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 6.7e-15 85.1 71 60.6
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 6.7e-15 85.1 149 46.3
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 8.7e-15 84.7 76 59.2
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 1.1e-14 84.3 204 49.5
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 1.5e-14 84.0 203 38.9
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 2.5e-14 83.2 194 40.2
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 4.3e-14 82.4 210 42.4
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 2.8e-13 79.7 161 50.9
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 6.2e-13 78.6 73 53.4
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 8.2e-13 78.2 49 73.5
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 1.1e-12 77.8 66 59.1
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 1.4e-12 77.4 71 57.7
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 1.8e-12 77.0 60 65.0
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 1.5e-11 73.9 151 60.9
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 2.6e-11 73.2 203 36.9
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 3.8e-10 69.3 72 52.8
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 5.0e-10 68.9 198 31.3
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 1.4e-09 67.4 201 44.3
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 1.4e-09 67.4 64 54.7
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 1.6e-08 63.9 155 37.4
ECA240G1188 Erigeron canadensis HOM05D007152 ORTHO05D008912 2.1e-08 63.5 46 60.9
ATR0693G346 Amborella trichopoda HOM05D007152 ORTHO05D008912 1.1e-06 57.8 203 30.0


User provided reference genes

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