Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.2e-256 887.5 438 100.0
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 1.0e-121 441.0 462 50.6
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 1.4e-121 440.7 458 50.4
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 8.8e-121 438.0 459 51.0
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.5e-120 437.2 459 50.8
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 5.7e-120 435.3 433 52.7
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 7.4e-120 434.9 460 50.0
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 9.7e-120 434.5 462 49.8
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 4.8e-119 432.2 462 49.4
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 8.2e-119 431.4 445 50.3
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 1.1e-118 431.0 457 49.9
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 1.1e-118 431.0 443 51.0
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 1.4e-118 430.6 440 50.9
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 1.4e-118 430.6 437 51.0
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 1.4e-118 430.6 462 50.0
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 7.0e-118 428.3 437 50.8
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 9.1e-118 427.9 468 48.9
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 9.1e-118 427.9 460 49.6
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 2.0e-117 426.8 437 50.8
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 3.5e-117 426.0 464 49.4
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 4.5e-117 425.6 459 48.8
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 4.5e-117 425.6 441 49.7
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 1.3e-116 424.1 463 47.9
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.3e-116 424.1 464 49.4
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 5.0e-116 422.2 461 48.6
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 8.5e-116 421.4 463 49.7
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 1.1e-115 421.0 450 48.4
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 1.5e-115 420.6 443 48.5
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.5e-115 420.6 456 49.1
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 1.9e-115 420.2 460 49.1
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.9e-115 420.2 463 47.9
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 1.9e-115 420.2 456 49.1
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 1.9e-115 420.2 458 49.3
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 2.5e-115 419.9 435 49.0
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 2.5e-115 419.9 443 48.8
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 3.2e-115 419.5 463 47.9
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 3.2e-115 419.5 445 50.1
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 4.2e-115 419.1 460 48.3
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 4.2e-115 419.1 442 48.6
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 4.2e-115 419.1 442 48.4
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 5.5e-115 418.7 456 48.7
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 5.5e-115 418.7 441 49.2
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 5.5e-115 418.7 465 48.8
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 5.5e-115 418.7 437 49.7
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 5.5e-115 418.7 462 47.8
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 7.2e-115 418.3 457 46.8
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 7.2e-115 418.3 437 49.4
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 7.2e-115 418.3 463 47.9
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 1.6e-114 417.2 467 46.7
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 2.1e-114 416.8 462 47.4
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 2.1e-114 416.8 462 47.8
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 2.1e-114 416.8 462 48.1
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 2.7e-114 416.4 471 46.7
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 2.7e-114 416.4 458 48.5
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 2.7e-114 416.4 460 48.3
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 2.7e-114 416.4 461 47.7
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 4.7e-114 415.6 453 49.0
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 4.7e-114 415.6 453 49.0
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 4.7e-114 415.6 453 49.0
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 6.1e-114 415.2 456 48.7
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.0e-113 414.5 442 49.1
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.0e-113 414.5 461 47.7
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.0e-113 414.5 460 47.8
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 1.4e-113 414.1 461 48.4
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 1.4e-113 414.1 460 47.2
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 1.4e-113 414.1 392 53.3
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 1.8e-113 413.7 465 47.7
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 1.8e-113 413.7 465 47.7
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 1.8e-113 413.7 438 49.5
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 2.3e-113 413.3 460 48.0
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 2.3e-113 413.3 460 48.0
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 2.3e-113 413.3 481 47.2
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 4.0e-113 412.5 404 51.2
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 4.0e-113 412.5 462 46.1
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 5.2e-113 412.1 464 46.6
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 6.8e-113 411.8 467 47.1
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 6.8e-113 411.8 453 48.3
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 6.8e-113 411.8 460 47.0
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 1.5e-112 410.6 454 48.0
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 1.5e-112 410.6 456 48.0
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 2.0e-112 410.2 441 48.8
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 3.4e-112 409.5 442 47.7
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 3.4e-112 409.5 443 47.4
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 9.7e-112 407.9 442 47.5
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 1.3e-111 407.5 460 47.4
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 1.7e-111 407.1 437 49.2
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 2.2e-111 406.8 442 48.2
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 3.7e-111 406.0 451 48.6
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 3.7e-111 406.0 443 47.4
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 6.3e-111 405.2 437 48.7
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 4.1e-110 402.5 468 45.7
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 7.0e-110 401.7 442 46.8
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 9.1e-110 401.4 503 44.9
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 1.2e-109 401.0 457 47.5
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 2.7e-109 399.8 464 45.5
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 3.5e-109 399.4 468 46.4
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 2.2e-108 396.7 468 46.2
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 2.9e-108 396.4 459 45.8
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 8.5e-108 394.8 460 46.1
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 1.9e-107 393.7 437 47.8
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 2.5e-107 393.3 449 46.5
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 5.5e-107 392.1 503 43.5
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 5.2e-105 385.6 443 45.4
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 1.5e-104 384.0 474 44.5
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 4.4e-104 382.5 446 45.1
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 2.2e-103 380.2 436 46.3
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.8e-102 377.1 453 44.8
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 2.4e-102 376.7 435 45.7
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 9.1e-102 374.8 433 46.0
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 1.6e-101 374.0 439 45.1
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 3.5e-101 372.9 414 47.6
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 3.8e-100 369.4 374 51.1
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 3.3e-99 366.3 435 45.3
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 4.2e-99 365.9 374 49.7
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.2e-99 365.9 457 45.3
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 3.6e-98 362.8 464 44.0
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 4.7e-98 362.5 504 40.9
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 6.1e-98 362.1 460 44.3
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.0e-97 361.3 423 44.9
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 2.3e-97 360.1 480 42.5
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 6.8e-97 358.6 374 49.5
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 2.4e-94 350.1 457 42.7
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 2.0e-93 347.1 435 45.1
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 2.0e-93 347.1 436 43.3
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 4.5e-93 345.9 433 44.3
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 7.8e-93 345.1 367 48.5
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.0e-92 344.7 439 43.7
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 5.6e-91 339.0 467 40.0
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 1.6e-90 337.4 405 44.9
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 4.7e-90 335.9 447 41.4
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 2.0e-88 330.5 442 41.6
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 1.2e-85 321.2 445 39.8
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.0e-84 318.2 470 39.1
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.1e-83 314.7 286 54.2
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 6.4e-79 298.9 456 39.3
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 2.1e-77 293.9 263 54.8
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 3.6e-74 283.1 446 37.2
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 8.1e-74 282.0 264 51.1
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 4.9e-71 272.7 264 51.5
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 6.4e-71 272.3 257 51.4
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 1.2e-69 268.1 257 51.4
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 5.1e-68 262.7 257 51.0
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 8.6e-68 261.9 257 50.2
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 8.9e-65 251.9 461 33.6
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 1.4e-62 244.6 213 54.9
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 2.1e-53 214.2 215 47.4
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 3.5e-53 213.4 215 46.5
Cre16.g663050 Chlamydomonas reinhardtii HOM05D003696 ORTHO05D005158 3.5e-53 213.4 456 28.9
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 8.1e-50 202.2 205 50.7
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 9.0e-49 198.7 185 53.0
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 2.3e-44 184.1 205 45.9
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 9.6e-35 152.1 205 38.5
CAN.G1488.2 Capsicum annuum HOM05D003696 ORTHO05D015571 7.9e-29 132.5 141 50.4
TPR.G39077 Trifolium pratense HOM05D003696 ORTHO05D015571 8.2e-26 122.5 136 49.3
CAN.G771.12 Capsicum annuum HOM05D003696 ORTHO05D005158 1.5e-24 118.2 129 48.1
Haze_24521 Corylus avellana HOM05D003696 ORTHO05D015571 2.6e-24 117.5 129 49.6
HanXRQChr04g0098101 Helianthus annuus HOM05D003696 ORTHO05D005158 3.2e-22 110.5 69 75.4
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 4.8e-18 96.7 124 40.3
Potri.004G049400 Populus trichocarpa HOM05D002538 ORTHO05D003162 1.1e-11 75.5 286 26.2
Sabra04G0031100 Salix brachista HOM05D002538 ORTHO05D003162 1.5e-11 75.1 286 25.9
Prupe.4G053400 Prunus persica HOM05D002538 ORTHO05D003162 2.0e-11 74.7 272 24.6
MD05G1309600 Malus domestica HOM05D002538 ORTHO05D003162 2.6e-11 74.3 272 25.0
TAR627G0078 Trochodendron aralioides HOM05D002538 ORTHO05D003162 2.6e-11 74.3 272 25.0
TAR627G0221 Trochodendron aralioides HOM05D002538 ORTHO05D003162 2.6e-11 74.3 272 25.0
MD10G1288200 Malus domestica HOM05D002538 ORTHO05D003162 5.7e-11 73.2 272 24.6
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 7.4e-11 72.8 72 45.8
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 1.7e-10 71.6 114 36.0
Actinidia04090 Actinidia chinensis HOM05D003696 ORTHO05D038062 2.2e-10 71.2 56 57.1
Cre11.g467610 Chlamydomonas reinhardtii HOM05D002538 ORTHO05D003162 2.4e-09 67.8 128 31.2
C09p47650 Brassica napus HOM05D003696 ORTHO05D000956 2.0e-08 64.7 102 41.2
SMO119G0123 Selaginella moellendorffii HOM05D003696 ORTHO05D015571 3.5e-08 63.9 104 39.4
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 2.2e-07 61.2 102 33.3
Pp3c22_9810 Physcomitrium patens HOM05D020712 ORTHO05D015571 2.2e-07 61.2 95 41.1
Pp3c18_12950 Physcomitrium patens HOM05D003696 ORTHO05D015571 1.1e-06 58.9 95 38.9
MCO12G362 Micromonas commoda HOM05D003696 ORTHO05D015571 1.9e-06 58.2 90 37.8
A08p37200 Brassica napus HOM05D002538 ORTHO05D013978 7.2e-06 56.2 117 29.1


User provided reference genes

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