Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-232 808.9 406 100.0
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 9.4e-210 733.4 406 92.6
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.0e-205 717.2 409 90.7
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.0e-203 711.1 417 89.2
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 2.9e-179 632.1 419 81.6
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.2e-169 597.8 330 92.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 4.9e-150 535.0 424 68.2
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 3.8e-142 508.8 424 65.6
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-141 506.9 426 66.0
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 9.3e-141 504.2 424 65.8
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 3.9e-139 498.8 431 64.3
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.2e-135 487.3 415 62.2
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 6.7e-131 471.5 425 60.9
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 9.0e-128 461.1 426 59.2
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.5e-127 460.3 358 67.0
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 2.6e-127 459.5 437 58.6
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 3.8e-126 455.7 425 59.5
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.2e-124 450.7 383 63.2
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 7.9e-124 448.0 417 59.7
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.3e-123 446.4 356 67.1
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 3.0e-123 446.0 432 56.0
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.9e-123 445.7 414 60.4
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.3e-122 442.6 427 57.6
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 3.1e-120 436.0 407 58.5
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 5.3e-120 435.3 348 65.2
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 9.0e-120 434.5 352 66.8
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-119 433.7 347 66.3
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 1.5e-119 433.7 410 58.8
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.5e-119 433.7 410 57.8
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 2.0e-119 433.3 348 64.7
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.6e-119 433.0 414 57.5
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 5.8e-119 431.8 414 58.2
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.2e-118 429.9 392 59.7
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 9.3e-117 424.5 416 54.3
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.6e-116 423.7 417 56.6
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 2.1e-116 423.3 407 56.0
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 2.7e-116 422.9 415 57.1
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 3.5e-116 422.5 415 54.9
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.0e-115 421.0 347 62.5
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.8e-115 420.2 415 55.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.8e-115 420.2 414 57.5
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.3e-115 419.9 416 56.5
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.0e-115 419.5 353 60.9
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 6.7e-115 418.3 403 56.8
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 8.7e-115 417.9 486 51.2
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 4.3e-114 415.6 348 62.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.7e-114 415.2 354 61.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 7.4e-114 414.8 347 62.2
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 9.7e-114 414.5 410 56.1
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.7e-114 414.5 350 60.6
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.2e-113 411.4 348 61.5
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.1e-112 411.0 413 54.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.4e-112 410.6 359 59.3
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.8e-112 410.2 426 54.7
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.4e-112 409.8 419 53.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.4e-112 409.8 417 54.0
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 5.3e-112 408.7 347 61.4
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 5.3e-112 408.7 427 53.2
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.2e-111 407.5 414 53.6
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-111 407.5 408 53.9
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 1.2e-111 407.5 408 53.9
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.0e-111 406.8 411 54.7
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.6e-111 406.4 413 53.5
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.4e-111 406.0 348 59.2
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 5.9e-111 405.2 358 58.4
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.0e-110 404.4 327 64.5
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.7e-110 403.7 358 58.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.7e-110 403.7 407 53.1
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.7e-110 403.7 419 53.5
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.1e-109 401.0 349 61.6
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.9e-109 400.2 417 52.5
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 2.5e-109 399.8 333 61.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 7.2e-109 398.3 350 60.6
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 2.7e-108 396.4 436 52.8
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.7e-108 396.4 411 54.3
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.6e-108 396.0 401 54.6
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 4.6e-108 395.6 423 51.5
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 4.6e-108 395.6 422 52.1
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 4.6e-108 395.6 348 59.5
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.1e-106 391.0 346 58.7
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 2.0e-106 390.2 334 60.8
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 4.3e-106 389.0 403 55.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 9.7e-106 387.9 417 51.6
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.2e-105 386.7 403 54.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.9e-104 381.7 406 51.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 2.2e-102 376.7 361 54.0
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 2.2e-102 376.7 335 60.3
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 2.9e-102 376.3 421 49.6
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.5e-102 375.2 382 53.1
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 5.5e-101 372.1 342 56.7
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 2.1e-100 370.2 414 49.8
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 5.1e-99 365.5 405 51.1
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 2.6e-98 363.2 444 48.6
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 2.8e-97 359.8 409 49.9
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.7e-97 359.4 347 54.2
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 3.7e-97 359.4 396 50.3
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.1e-96 357.8 340 55.0
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 4.1e-96 355.9 410 50.7
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.7e-94 350.5 344 53.5
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 8.0e-92 341.7 284 63.4
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.4e-91 340.9 438 50.2
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 2.0e-90 337.0 428 47.0
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.8e-88 330.5 408 46.3
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 5.5e-85 318.9 286 59.8
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 2.1e-84 317.0 322 52.8
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.3e-83 313.5 467 42.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.5e-82 310.8 327 52.0
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 3.3e-82 309.7 333 50.2
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 3.1e-80 303.1 200 71.0
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 3.5e-79 299.7 268 56.3
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.2e-78 297.0 255 59.6
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 8.5e-78 295.0 265 63.0
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 2.8e-68 263.5 381 44.6
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-64 251.1 340 45.6
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.5e-61 241.1 283 49.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.2e-49 200.7 269 43.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.2e-43 179.5 133 65.4
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 6.0e-39 166.0 168 51.8
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.8e-36 157.1 149 55.7
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 2.8e-36 157.1 117 76.9
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 8.4e-33 145.6 327 29.1
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.7e-30 137.9 206 39.3
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 5.1e-30 136.3 365 28.2
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.9e-29 134.4 139 56.8
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-27 127.9 71 97.2
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.5e-26 124.8 79 70.9
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.8e-25 120.2 150 40.7
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.9e-24 117.9 208 38.9
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.0e-22 112.1 69 73.9
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.4e-19 101.7 257 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 3.8e-17 93.6 240 31.2
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 4.2e-16 90.1 95 58.9
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.4e-16 89.7 97 61.9
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 3.0e-14 84.0 71 57.7
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 3.3e-13 80.5 309 24.3
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 4.3e-13 80.1 109 45.0
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.8e-09 67.0 162 29.0
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.5e-08 64.3 40 62.5


User provided reference genes

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