Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.1e-35 152.9 82 100.0
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-35 152.9 82 100.0
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.5e-29 131.7 81 86.4
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 3.6e-28 127.9 81 87.7
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.6e-26 121.7 72 93.1
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-23 112.5 110 64.5
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-23 112.5 110 64.5
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 1.8e-19 99.0 82 67.1
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 4.0e-19 97.8 69 76.8
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 1.2e-18 96.3 66 77.3
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 2.0e-18 95.5 80 67.5
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 4.5e-18 94.4 81 60.5
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 5.8e-18 94.0 79 67.1
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 1.3e-17 92.8 82 61.0
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.3e-17 92.8 82 61.0
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 1.7e-17 92.4 71 70.4
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 6.5e-17 90.5 79 63.3
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 6.5e-17 90.5 80 63.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 8.4e-17 90.1 74 63.5
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 4.2e-16 87.8 66 68.2
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.2e-15 86.3 71 62.0
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 1.2e-15 86.3 82 58.5
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.6e-15 85.9 67 67.2
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 2.1e-15 85.5 69 68.1
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 2.7e-15 85.1 83 61.4
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 2.7e-15 85.1 69 65.2
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 2.7e-15 85.1 69 66.7
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 4.6e-15 84.3 79 58.2
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 4.6e-15 84.3 79 58.2
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 4.6e-15 84.3 68 67.6
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 4.6e-15 84.3 81 59.3
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 4.6e-15 84.3 82 59.8
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 4.6e-15 84.3 60 71.7
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 6.0e-15 84.0 62 69.4
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 6.0e-15 84.0 77 62.3
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 7.9e-15 83.6 78 60.3
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.0e-14 83.2 79 57.0
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.0e-14 83.2 81 55.6
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.0e-14 83.2 66 66.7
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.3e-14 82.8 62 67.7
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 1.3e-14 82.8 79 58.2
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.3e-14 82.8 69 65.2
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.3e-14 82.8 69 63.8
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 2.3e-14 82.0 69 62.3
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 2.3e-14 82.0 66 66.7
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.3e-14 82.0 81 56.8
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 5.1e-14 80.9 62 66.1
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 5.1e-14 80.9 65 60.0
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 6.7e-14 80.5 74 63.5
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 6.7e-14 80.5 69 60.9
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 8.7e-14 80.1 69 63.8
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 8.7e-14 80.1 69 62.3
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.1e-13 79.7 80 60.0
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 1.1e-13 79.7 80 60.0
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 1.9e-13 79.0 75 60.0
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 2.5e-13 78.6 69 58.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 4.3e-13 77.8 74 58.1
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.3e-12 76.3 71 63.4
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 2.1e-12 75.5 82 53.7
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 2.1e-12 75.5 69 60.9
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 4.8e-12 74.3 72 55.6
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 4.8e-12 74.3 74 56.8
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 6.2e-12 73.9 68 63.2
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 1.1e-11 73.2 43 90.7
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 1.1e-11 73.2 67 56.7
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.4e-11 72.8 76 56.6
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.4e-11 72.8 74 58.1
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 1.4e-11 72.8 66 59.1
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.8e-11 72.4 64 62.5
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.4e-11 72.0 76 52.6
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.4e-11 72.0 78 53.8
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 2.4e-11 72.0 67 55.2
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.3e-11 70.9 64 56.2
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.3e-11 70.9 64 56.2
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 5.3e-11 70.9 77 53.2
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 5.8e-10 67.4 74 52.7
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 7.6e-10 67.0 72 48.6
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 1.0e-09 66.6 45 71.1
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 8.4e-09 63.5 73 52.1
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 2.5e-08 62.0 69 50.7
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 3.2e-08 61.6 98 40.8
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 3.5e-07 58.2 63 49.2
Os06g0651200 Oryza sativa ssp. japonica HOM05D007802 ORTHO05D009879 6.1e-07 57.4 61 50.8
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 6.1e-07 57.4 63 49.2
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 1.8e-06 55.8 54 59.3


User provided reference genes

Program Settings